K28536

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28536

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28536

Determination of introduced cDNA(s)

  • J023076C15 - Rice Full-length cDNAs - Original: J023076C15

    full reading [+] show sequence

    Nucleotide sequence: J023076C15 - full reading 
    GACCTGTCAT CGTCACTCCT CATTTCCTCC TCTTCTCTCG GCATCTTCAT 
    CTCTATCCCC TTTCCTCTAT CTCTTCTCTC TACAGCAGCG CCACCACCAC 
    GGACTCCGCC GCCGCTCCCG CCACCGCCAC ATCCCTTGCC GGTGATCCAG 
    ATGAGGTTCC GCGGCGTGCA GGTGGATCTC GTGTACGCCG GCGTGTGCCT 
    CCCGTGGTGC CCGACAACCT GGAGTGGACC TCAGTGCGAC CGGTCGGTGC 
    TCCGCGGCCT TGACGACCTT GCCACGGCGC GCAGCCTCAA CGGCATCCGC 
    GTGGCCGACG AGATCCTGCG GCTTGTCCCG GAGACCGCCG TGTTCCGCAC 
    CATGCTGCGG TGCGTGAAGC ACTGGGCTAA GGCGCGGGGC GTCTACTCCA 
    ACGTCGCGGG CTTCCTCGGC GGCATCGGCT GGGCTATCCT CGTGGCGCGC 
    ATGTGCCAGC TCTACCCCAA CACATCCCCA GCATGCTGCT CCCGCGCTTC 
    TTCCGCGGCT TTGCGCGGTG GAAGTGGCCC AGCCCGGTGA TGCTGCGCGC 
    CATCGAGCAC GACGACGGCG AGCTCGGCCT CAGACGCCAC CCTGCGCGTC 
    ATCACCGAGC AGCTCGCCGT CGGCGACGAC GTCTGCCAGG AGATCGTCAA 
    GGCCGACGCC ATGTGGGTGG TGATTAGTTA AGTACTGCTT GGTCTTAATG 
    ATCGGTAACT GTATGTGTTG CAGCTTGACT AACAAATCAC TGAGTCTGAG 
    AAATAAGAGT GGAAGTGTAG CTAGTTCGCC GCAAGCTCGT GTTTGTCCAC 
    TGAAGTATTT GCATCACTTG TGTATTCCTT CGTGCGTGTG TGACCTCGCG 
    TGTGTTTTGT TGTTTCTCTG GGCCAAAGCT CACAGGGCTG GGTGGAGTCG 
    CGGTTGAGGC AGCTGTCGGC CAGGGTGGAG GCGGACACGT CCGGGATGCT 
    GCTCTGCCAC CTTCACCCGC AAGCGTACGC CACCGAGCAC CACAAGGAGC 
    CGCGGCGGCA GGGGGAGCGG GAAGCTGTCT CCGCCGCGGC CGCCTCGACG 
    CCAAGGATCT CCGGGCGGCT CGCCGGCGCT GCACGGATGG CCTTGAGGAG 
    AGCAGCTAGC TCGCTCAGAT GGCCTTGAGG TGGTCGGCAG CGGCGGCGGC 
    GGCGATGTCC TTGCCGTCGG CGTCTCAGCG AGGGCGACGA TGTTGGGGGA 
    GTCCATGGCC ACGACGTCCT CCGTGGTGAA CCCATCCTCG TTGCGGAGGA 
    GCTCCTTGCT GCCGGCGGCG ACCATCCCCG GCGTAGGCGT GGCAGTGCAC 
    GGAGCATGCG GCAGCGTCGA CGGCGAGGTC CGCCTCCTGA GCGCCGTCAG 
    CCTTCAGCCT TCCCGAGCCT TGGCACGGCG GACCTCACGT GGTCCTCTCC 
    CACCGGGGAC TGAGAGAGAG GATATAGATA ACTGATAAGA GGGGAGAAAT 
    AGGGTGACAG GTGGGGTCCA CGTGGGTCCC ACCATTATTT TTATTATTTT 
    GTATGTGCAA CTGACATGTG GGTCCCACGG GTTTGTTATT TTTCCGGATC 
    AAATTGCCAC GTAAGTACC

    Gene models with high sequence identity

    1. AT2G25850.2 [+] show detail - poly(A) polymerase 2
      E-value: 1e-37; Score: 53.10

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 6.5e-29
    Gene3D no description 0.00062
    HMMPanther POLY(A) POLYMERASE-RELATED 7.4e-48
    HMMPanther POLY(A) POLYMERASE 7.4e-48
    HMMPanther POLY(A) POLYMERASE-RELATED 3.7e-13
    HMMPanther POLY(A) POLYMERASE 3.7e-13
    HMMPanther POLY(A) POLYMERASE-RELATED 2.9e-14
    HMMPanther POLY(A) POLYMERASE 2.9e-14
    superfamily PAP/OAS1 substrate-binding domain 8.4e-24
    superfamily PAP/OAS1 substrate-binding domain 3.7e-07
    HMMPfam Poly(A) polymerase, central domain 1.7e-37
    HMMPfam Poly(A) polymerase, RNA-binding domain 3.5e-07
    HMMPfam Poly(A) polymerase, central domain 2.5e-09

    See the detailed result >

    AT2G25850.2

    Model type
    Protein coding
    Short Description
    poly(A) polymerase 2
    Curator Summary
    Encodes a poly(A) polymerase. Located in the nucleus.
    Computational Description
    poly(A) polymerase 2 (PAPS2); CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, central domain (InterPro:IPR007012), Nucleotidyl transferase domain (InterPro:IPR002934), Poly(A) polymerase, RNA-binding domain (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nuclear poly(a) polymerase (TAIR:AT4G32850.10); Has 815 Blast hits to 807 proteins in 221 species: Archae - 0; Bacteria - 15; Metazoa - 260; Fungi - 213; Plants - 191; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR