K28538

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28538

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28538

Determination of introduced cDNA(s)

  • J013122K21 - Rice Full-length cDNAs - Original: J013122K21

    full reading [+] show sequence

    Nucleotide sequence: J013122K21 - full reading 
    GGGTTTCGGG CGCGCGTCTC CTCCCTCTTG CTTGTTAGTT TCCTCGTAGC 
    TAGTGGGGTG AGGGTGTGTG TTTGGTTGGT GAGCAATGGC GGCGGCTCGC 
    GGTGGAAGAC GACGACGACC GTGGTCGTCG TCCTCCTCCT GCGGCTCTCC 
    GTTTCTGATG ATGCTGATCA GCTGTTTGCT GTGGCTGCAC CGGGAAGCAG 
    CTCCGTCGCT CGCCGCCGAT ACCGTGACCG TCGGCCGGCC GCTCTCCGGC 
    CGGCAGGTGC TCGTGTCCAG AGGTGGCAAG TTCGCGCTCG GATTCTTCCA 
    GCCAGATAAC TCGTCGCAGC GTTGGTACAT GGGCATCTGG TACAACAAAA 
    TCCCGGATCA CACCAAGGTG TGGGTCGCTA ACAGGCGGGC CCCACTCTCC 
    GACCCGGACA CGTCACGCCT CGCCATCTCG GCCGACGGCA ACATGGTCCT 
    CCTCGACCGT GCCAGGCCAC CGGTCTGGTC CACCAACGTC ACCACCGGCG 
    TCGCCGCCAA CTCCACCGTC GGCGTCATCC TCGACACCGG CAACCTCGTC 
    CTCGCCGACG CGTCGAACAC CTCCGTCGTG CTGTGGCAGA GCTTCGACCA 
    CTTCGGCGAC ACGTGGCTCC CCGGCGGCAG GCTCGGCCGG AACAAGCTCA 
    CCGGCGAGGT GACGCGCCTG GTGGGGTGGA AAGGCTACGA CGACCCGACG 
    CCGGGGATGT TCTCCCTCGA GCTCGACCCC GGCGGCGCCA GCCAGTACGT 
    GATGAGCTGG AACGGCAGCA GCCGGCTGTA CTGGAGCAGC GGCAACTGGA 
    CCGGCGGCAT GTTCAGCTCC GTGCCGGAGA TGATGGCGAG CAACGCCGAC 
    CCGCTGTCGC TGTACACGTT CAACTACGTC GACGGCGAGA ACGAGAGCTA 
    CTTCTTCTAC GACGTCAAGG GCGAGGTGGT GCTGACGCGG TTCGTCGTCG 
    ATGTCACCGG CCAGATCAAG TTCATGACGT GGGTGGACTC CGCCGCGCAG 
    TGGGTGCTCT TCTGGTCGGA GCCCAAGGCG CAGTGCGACG TCTACTCGAT 
    CTGCGGGGCG TTCGGCGTCT GCGCCGAGGA CGCGCTGCCG GCGTGCAGCT 
    GCCTCCGGGG CTTCCACGCG CGGCAGCCGC GGCGGTGGCT GCAGGGCGAC 
    CACACCGCCG GCTGCGCCAG GAGCACCGCC CTGCAATGCG GCGGCGGCGG 
    CGGCGCGCAG CCGGCGGCGC AGAAGACGAA GAGCGACAGG TTCTTCGTGA 
    TGCCCAACGT GAACCTGCCC ACCGACGGCG TGACCGCGGC GAGCGCGAGC 
    GCTCGCGACT GCGAGCTCGC GTGCCTCGGC AACTGCTCCT GCACCGCGTA 
    CTCCTACAAC GGCAGCTGCT CGCTCTGGCA CGGCGACCTC ATCAGCCTCC 
    GGGACACGAC CGGCGCCGGC AATGGCGGCG GCCGCAGCAT TTCGATCCGC 
    CTGGCCGCGT CCGAATTCTC TGGCAACGGG AACACCAAGA AGCTGATCAT 
    CGGGCTCGTC GTCGCCGGAG TCGCCGCCGC GGTGATCCTC GCCGTCGTGG 
    TCACGGTCCT CGTCCGGAGA AGCAGAAGGC TGAAGGCGTT GCGGCGAGTG 
    GAGGGCTCCC TGACGGCGTT CACGTACCGT GACCTGCAGG TCGCGACCAA 
    GAGCTTCTCG GAGAAGCTCG GCGGCGGCGC GTTCGGGTCG GTGTTCAAGG 
    GGTCGCTGCC GGCGGACGGG ACGCCGGTGG CGGTGAAGAA GCTGGAAGGT 
    GTTCGTCAGG GGGAGAAGCA GTTCCGTGCG GAGGTGAGCA CCATCGGCAC 
    GATCCAGCAC GTCAACCTGA TCAGGCTGCT CGGCTTCTGC ACCGAGCGAA 
    CACGGCGGCT GCTGGTGTAC GAGCACATGC CGAACGGGTC GCTGGACAGG 
    CACCTGTTCG GCCATGGCGG CGGCGTCCTG AGCTGGGAGG CGAGGTACCA 
    GATCGCGCTG GGCGTGGCGA GGGGGCTCGA CTACCTGCAC GAGAAGTGCA 
    GGGACTGCAT CATCCACTGC GACATCAAGC CGGAGAACAT CCTCCTGGAC 
    GACGCGTTCG CCGCCAAGGT CGCCGACTTC GGGCTCGCCA AGCTGATGGG 
    GCGCGACTTC AGCCGCGTGC TGACGACGAT GCGCGGGACC GTGGGCTACC 
    TGGCGCCGGA GTGGATCACC GGCACGGCGA TCACGACCAA GGCCGACGTG 
    TTCAGCTACG GGATGATGCT GTTCGAGATC ATCTCCGGGA GGAGGAACGT 
    GGAGCAGGGG CAGGACGGCG CGGTGGACTT CTTCCCGGCG ACGGCGGCGC 
    GCCTCCTGTT TGACGGCGAC CTCAAGGGCG CCGTGGACGG CCGCCTCGCC 
    GGCAACGCCG ACATGGGCGA GGTGGAGAGG GCGTGCAAGG TGGCGTGCTG 
    GTGCGTGCAG GACTCGGAGG CGACGAGGCC GTCCATGGGG ATGGTGGTGC 
    AGGTGCTCGA GGGGCTCGTC GACGTCAACG CGCCGCCGAT GCCGAGGTCG 
    TTCAAGGTGC TCGGCGATCC GTCCAACTAC GTCAAGTTCT TCTCGGCGTT 
    GCCGTCGATC TCATGATCAC ACCGACCGGA TTAATCAGCA GGGGATCTGG 
    GATTATTATT ACCTGCATAT ACATATAGCA GAAATGTATA CAAGTTGTTA 
    ATTAGCTTTC GAGATGTATT CAAGAGCTAG CTACCGATAA TATTTTTTCC 
    TCCAAATTAT TGGCAGTAGC CTAGCTAGTA GCTACCGCTA TATGGTTTTG 
    CAAGAAATAT GTAATGGTAG TGAGCTTACT AATCCTCAAA TTCTTGC

    Gene models with high sequence identity

    1. AT2G19130.1 [+] show detail - S-locus lectin protein kinase family protein
      E-value: 0; Score: 728.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Serine/threonine-protein kinase-like domain 1.5e-48
    HMMPfam Curculin-like (mannose-binding) lectin 5.2e-31
    HMMPfam S-locus glycoprotein 1.3e-30
    HMMPfam PAN-2 domain 0.0000000000000038
    superfamily Protein kinase-like domain 3e-77
    superfamily Curculin-like (mannose-binding) lectin 1.1e-31
    HMMPanther S-RECEPTOR KINASE 6.8e-205
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 6.8e-205
    Gene3D no description 6.6e-19
    Gene3D no description 3.4e-52
    ProfileScan Protein kinase, catalytic domain 36.81
    ProfileScan Curculin-like (mannose-binding) lectin 19.576
    ProfileScan Apple-like 9.489
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMSmart Curculin-like (mannose-binding) lectin 6.1e-40
    HMMSmart Apple-like 0.000000046
    HMMSmart Serine/threonine-protein kinase domain 5.4e-33
    HMMSmart Tyrosine-protein kinase, catalytic domain 2.7e-28

    See the detailed result >

    AT2G19130.1

    Model type
    Protein coding
    Short Description
    S-locus lectin protein kinase family protein
    Computational Description
    S-locus lectin protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, sugar binding, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), Apple-like (InterPro:IPR003609), PAN-1 domain (InterPro:IPR003014), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), EGF-like (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase 4 (TAIR:AT4G00340.1); Has 116366 Blast hits to 114909 proteins in 4332 species: Archae - 99; Bacteria - 12770; Metazoa - 42761; Fungi - 9470; Plants - 34242; Viruses - 402; Other Eukaryotes - 16622 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR