K28542

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28542

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28542

Determination of introduced cDNA(s)

  • J013036A08 - Rice Full-length cDNAs - Original: J013036A08

    full reading [+] show sequence

    Nucleotide sequence: J013036A08 - full reading 
    GATTCCCGTT CTTCACCTCT CGCTCCTATA AAATCCAACG TGGACAACCA 
    AACGTCCAAG GCCACACACA AACTCCAAAC CCATTACTCT CCTCACGACA 
    TTCTCGCGCT CTCCCCTCCT GTAAAGATCG GTGGTTGCGA GCGGCGCCAC 
    GGTAAAGCGG AGCAAATTAC TCCTATATAT TACCCTGCAG CGTAGACCGA 
    TCGATCGGGC GGCGGCGGCG GCGTATGGCT GGGAGCGCGA GGTCGGCGGC 
    AGCGAAGCAC GCCTACCGGA TGTTCGCGCC GTCCAGGGGC GCAGCGGCGA 
    GGTGCCCCGG AAGCCCCGGG GCGGACGAGT TCGACGAGTC GGACGTGTGG 
    GGCTCGTACG GCGCGGCCGG CGTGGAGTCC AGCCCCGCCG AGCTAGGCGC 
    CCGGGGCCGC GCGATCCCGT CCGCCCGCGC CGGCCGGAAG GCCCCGCTGG 
    ATCGGGCCGC CGGCTCGCTG CCGGTGAACA TACCGGACTG GCAGAAGATT 
    CTTGGGGTCG AGTACAGGGA TCACCAGGCC GCTGCTGCGG AGTGGGAGCT 
    CCAGGGCGAC GGCGACGACG ACTACGAGTA CGGCAAGGTG GCCGGCGTCG 
    GCGGCGTGGT GATACCGCCG CACGAGCTGG CGTGGCGCGG CCGCGCGGCG 
    TCGCTGTCGG TGCACGAGGG GATCGGGAGG ACGCTCAAGG GGCGCGACCT 
    CAGCCGGGTC CGGGACGCGG TCTGGAAGAA GACCGGCTTC GAGGACTGAC 
    CGGCGAGCTA GCTGATCACT CCCGGTGGTT GGCCTCGCCG CGCAGACGTG 
    CAGTAGGTTT AAAATGAGTA CTTAGTAGTA CTAATTACTT TATTCTCTTT 
    TGTTCTTATT TCTTTTTCTT TCGCCATGGA CAAGATAAGA AATTGGGTAG 
    TATTCCTAGT CCTATAAGGC TAGATGCAAG AGAGGACAGG AAGAGTGGGT 
    GGTTTGTTCA ATCAAGGTGT GACAATTTTA AGGGCACCTG GAGATGGTTG 
    GAGTTGGTTG ATCAGCTGAT CGATCCTGTA TTTTTTTTCT ACCCTTCGAG 
    TATGGGAAAT TCCACATTAC TGCACAGTGT ATGTATTATA CCACTGTAGT 
    ATGTAGTATG CAGAATTGTA CATGCCGTTT TGTGCGAAAT TGCAGAGAGC 
    GAAGAAATTC

    Gene models with high sequence identity

    1. AT5G60680.1 [+] show detail - Protein of unknown function, DUF584
      E-value: 7e-24; Score: 108.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G60680.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function, DUF584
    Computational Description
    Protein of unknown function, DUF584; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF584 (TAIR:AT3G45210.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR