K28545

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28545

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28545

Determination of introduced cDNA(s)

  • J033147B21 - Rice Full-length cDNAs - Original: J033147B21

    full reading [+] show sequence

    Nucleotide sequence: J033147B21 - full reading 
    GAGTAGCAAA CCCTCACCTA CTTCTCCCCA TCTCTCTCGC TCCGCTTCTG 
    TGTTTCCGGC GGAGGCACGG CCACCCCCAC CCTTCTCCCC CACCTCGCCT 
    CGCCTCGCCT CCTCCTCGGG CTCGCCGCCG GCGAGCAGGG CACCGTGGGG 
    GGACACGGCG TCGACGGGCC TCCTCTCCTC CCTGACCCCG CCCTCTAGCC 
    TTCTCCCCCT TGCGTGCGGC CTTCTCGCAC GCGCGCGCGG GTACCACGAG 
    CATCCCGGTG ATCGAAAAAT CGAAATCGAA GCCACCGCCG CGTCCGTTTC 
    TTCACTCTCC GTCTTTCCAA GCAGCATGAC GAGAGGCGAG AAGGGGATGC 
    AGCCCAAGAT CAGTGCGTTC TTCAAGCGTC AGGCCCCCGA GCCCGAGACG 
    AGCAGGTTCT TCATCTTGGT CCCCTCTTCA AATCTGTTAG CTGTAGCGAT 
    CCGGTACCAA ATATTGCCGG ATTCCATTCT AGTAGCAAAT TTCTGCAATA 
    TTCCATCAAT TAGAGCGAAT ATTAAAATCG CTCGTCAGGT TGGAAAAAAA 
    TGGTTGTTGA TTTAGTTCTC GTTAATTCCC AAGCATGCTG TCCGACATTG 
    GCATGTTCCT GGATTCAGAT TTGATAATGG ACTGATCAAT CTTTGTTGAT 
    TTGGTAAGTG GCGGTGACAC GCATAGGGAA GGAACCTGCG GGACGGAGGT 
    GAAGAGGCCC AAGAGCTGTG CGGATGGCAA GGTCCTCAAC AAGAAGAGGA 
    ACTACGCGCA GTTCCACCTG GAGCTTGGGC AGCCCGATTT TCTCCTCCAC 
    ATGTGCTCGG TTTGTGGCAT GATGTATGCC CGCGGGAACG ACGACGATGA 
    GAAGGCTCAC AAGGCATACC ACAAGAGTTA CTTCGAGGGT GTCCCGTTCA 
    AGGTGTTGCA CCTGATGTAT ATTTGTGAAT CTCACTCTTC TGTTCATCTC 
    GTGTTATAAA TTTCTGTGAA GAGTTTATGA CAAATGTTTG AGTTGCAGGG 
    TTGGCGCAAT GAAACCGTGG TCGCGAGGTC TGAAGGTGGG GATCGGATAA 
    TTCTTGTGAC TGATGAAAAT TCATGTGCTC GGAACAGCAA GGTATTTTGC 
    CTGAATGACT AACTGTATTG CCTAGATAGT TGAAAGAAAT CACTAGTTGG 
    GGTCTTGGGG AAATGAATAT TGAAAAGAGT GGGTTCCTCA TAGTTCTAAA 
    CTGTAGAATG TGTGTCTTTA CTAACTGCGA AGTTTCTGAT CCAATTTTGC 
    AACCACTTTA CATTTACGAG AAGTTCAGAA GCAGATTGCA GACATTTTAT 
    GATTATGTAA TGTCATGTGA ATATTTCAGG TCCAGGAGGT GATCAAAGTG 
    GTACAGAAGG AGCTGGGGTT TGGTGAAGGT CAGCTCCTTC ACAAGCTTTG 
    TAAGGTATAT TTGTTCATAT CTAGTCAGAG GATAGTGGGA TGCCTTGTTG 
    TGGAACCAAT CAAAACAGCA CATAAAGTGA TTCCAGGCTC CACAGAGGAA 
    AACGGCAGTG ATCTGCCTGT TGATAAAATT GAACCAGTCA AAACAAACCA 
    TACATTAGCG TTCGGGAAAA TCAGTTTTAA GAGGGAAGTC CTGAAACGGC 
    ATGATCATTC AGACAAGAAC AAAGAAGAGT ACCGAGATCC TGGTGCTATA 
    ATATGTGAAA AGGAAGATGT TCCTGCACAT TGTGGATTTC GAGCAATTTG 
    GGTTGTACCG TCACGCAGAA GAAAGCGAAT AGGGTCACAA CTGATGGATG 
    CTGCTAGAAA AAGCTTCCTT GAAGGCGAGA CTTTGTGCAT CTCACAGTGC 
    GCTTTCTCAC CGCCTACTTC CTCCGGGAAG GCGCTGGCAC GCAGCTATTG 
    CAAGACCAGC GCATTCTTAG TCTACAAGGA GCAAGATGCA TAGGAGATGC 
    TGCAGAAGAT GTTACATATC TGAAACTTCT CTTCCCATTG TAAAAATTGT 
    TTTGCTGGGG ATATATGTGA AACATAAACA GGCATGTTCT GTTTTTAGTG 
    TAAGTCTAAG CACCAGAAGC AGTGCGTTTT TGCAGGATCT CTATGTATTG 
    ACACTTTGGA TTTCCTGATC AGCAGCATTT TCTGAATATC

    Gene models with high sequence identity

    1. AT4G31400.1 [+] show detail - damaged DNA binding;DNA-directed DNA polymerases
      E-value: 6e-32; Score: 136.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SUBFAMILY NOT NAMED 2.6e-16
    HMMPanther DNA-repair protein, UmuC-like 2.6e-16
    HMMPanther SUBFAMILY NOT NAMED 1.3e-18
    HMMPanther DNA-repair protein, UmuC-like 1.3e-18

    See the detailed result >

    AT4G31400.1

    Model type
    Protein coding
    Short Description
    damaged DNA binding;DNA-directed DNA polymerases
    Curator Summary
    Encodes CTF7, a homolog of the yeast CTF protein required for the formation of sister chromatid cohesion. Arabidopsis CTF7 is similar to Saccharomyces cerevisiae CTF7 in that it lacks an N-terminal extension, exhibits acetyltransferase activity, and can complement a yeast ctf7 temperature-sensitive mutation. Arabidopsis CTF7 is critical for female gametophyte and embryo development, but not for the establishment of mitotic cohesion during microgametogenesis or during endosperm development.
    Computational Description
    CTF7; FUNCTIONS IN: damaged DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: sister chromatid cohesion, embryo sac development, embryo development; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DNA-repair protein, UmuC-like (InterPro:IPR001126); Has 328 Blast hits to 327 proteins in 141 species: Archae - 0; Bacteria - 2; Metazoa - 149; Fungi - 104; Plants - 43; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR