K28615

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28615

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28615

Determination of introduced cDNA(s)

  • J013012D06 - Rice Full-length cDNAs - Original: J013012D06

    full reading [+] show sequence

    Nucleotide sequence: J013012D06 - full reading
    GGTGCTACTA TTAGAGGAGG AGACGATCTC TTCCCCGTCC CTGCAGGATC 
    ATGGGAGAGA AACATATCAT CCTGCCAAGA TTGGTTCCAA GTAAGCTATC
    GCACCGCCAG CAGCTGTGTG GTCATCGATC AGTTTCTGAG ATTTCAGGTG
    TAGTGGATGA AACCTTGGGA AAGAGGCCTC TGGATGGGCA GAATGATATA
    CTCAGATACA GGTTGTTCAC TAGTACGTGG AATGTTGGTG GTATGACACC
    ATCCAGTGAT CTAGACTTGG AGGATTGGAT GGATTCAACA GCTAACTCCT
    ATGACATCTA CGTTCTTGGG TTCCAAGAGA TAGTGCCACT CAACGCAAGA
    AACGTGCTTG GTCCTAGGAA TAGCTGTATA TCTACAAAGT GGAACTCACT
    GATTGGGGAG GCACTAAACA AAAGGAGGAG AAGAGGAGCA GTGTTGCATC
    AAGAAATCAC AAATAGCAGT GCAACGGAGA GATCTGCGCA GGAAGAACAC
    TTTAGATGCA TCATGAACAA GCAGATGGTG GGCATCTTTA TGTCAGTCTG
    GGTGAGAAGC AATCTTAGGC CATACATTCA CCATCTGAAT GTGTCTTGTG
    TTGGTTCAGG CATCATGGGC TACCTAGGGA ACAAGGGCTC GGTGTCAATT
    CGATTTGTGC TACACGAGAC GAGCTTTTGC TTTGTTTGCT GTCACCTGGC
    TTCAGGCGGC AAACAAGGGG ATGTACTGCT GAGGAACTTT GATGCTGCGG
    ATATACTCGT GAGGACGAGA TTTCCTGGTG GTGCAACCCA AGAATTGCCA
    AAGAAGATCC TTGACCACGA TCAAGTCGTT TTGCTCGGTG ACTTAAATTA
    TAGGATATCC TTGGAAGAGG CTGAGACAAG GTTGTTGGTG GAAGACAAGA
    ATTGGTCCAT CCTGTTAGAG AACGACCAGC TATTGATCGA GTTCTCGACG
    GGTCGGCATT TCGACGGTTG GCAAGAAGGG CTGATCACGT TCTCTCCCAC
    CTACAAGTAC CACCCCAACT CCGATCAGTA CTACTGGTGC TTCGACGGTG
    CGCTTGGAAA AAAGAAGCGT GCCCCAGCAT GGTGTGACCG CATTCTTTGG
    CGCGGTAAGG GCCTGAAGCA AATCCAATAC GACACATGCA ACTACAGGTT
    GTCCGACCAC CGGCCGGTGA GAGCAGTTTT CCATGCCGAA TGTGTGATCA
    GAGGAGATGC AGATTGCGCG TGTGGCTGTA TTGCTCTCAG CTCTTCGAGT
    GAGTGACAAA TGGTCTAGGA GGATACGTGC CATTTAACCA AAGATTTACT
    CATGAGGGCA TGACTGCCAA TCTGAAACTG AACGACTCGA TCATGATTCA
    CGGCAATTTA CCTGTGGATC CGGGATGGAT TTTCAGGTGT GAAATCTGCC
    GATTTTTAGA ATCTTGAATG GTAACTGGAG GCTGGAATGA CAGGAATGCT
    CAATTGGAAC TAGAAGCGTT TAATGGTCTT CTCTTTTTTT AACTCTGACC
    GAGGTTGCAC AAATGCTCAT TGTTCTTTAA ATTTATTGAT GGAGCTTTCT
    CATTTGAACT TGTCCTCCGG GTTAATTTGT TTCCTCGATC ATCTCTTTAC
    TGGAAGAATA TCTGTATTTG TACATTTTGT TCATGAGAAT CGAAACAGAT
    ATGAGAGGGC TTGGAGC

    Gene models with high sequence identity

    1. AT2G01900.1 [+] show detail - DNAse I-like superfamily protein
      E-value: 2e-114; Score: 409.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Inositol polyphosphate related phosphatase 4.3e-62
    HMMPfam Endonuclease/exonuclease/phosphatase 7.1e-51
    HMMPanther TYPE I INOSITOL POLYPHOSPHATE 5-PHOSPHATASE, 2.1e-125
    HMMPanther INOSITOL 5-PHOSPHATASE 2.1e-125
    Gene3D no description 3.9e-95
    superfamily Endonuclease/exonuclease/phosphatase 1.8e-90

    See the detailed result >

    AT2G01900.1

    Model type
    Protein coding
    Short Description
    DNAse I-like superfamily protein
    Computational Description
    DNAse I-like superfamily protein; FUNCTIONS IN: hydrolase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: hypocotyl, sepal, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT2G37440.1); Has 2320 Blast hits to 2027 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 735; Fungi - 544; Plants - 769; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR