K28615

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small) dark green (PATO:0001249) (Cauline leaf::Color::dark)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) decreased width (PATO:0000599) (Rosette leaf::Shape::narrow) dark green (PATO:0001249) (Rosette leaf::Color::dark) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
T2
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small) dark green (PATO:0001249) (Cauline leaf::Color::dark) abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) epinastic (PATO:0000945) (Rosette leaf::Shape::epinastic) dark green (PATO:0001249) (Rosette leaf::Color::dark) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many) abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28615

Determination of introduced cDNA(s)

J013012D06 - Rice Full-length cDNAs - Original: J013012D06

full reading [+] show sequence

GGTGCTACTA TTAGAGGAGG AGACGATCTC TTCCCCGTCC CTGCAGGATC 
ATGGGAGAGA AACATATCAT CCTGCCAAGA TTGGTTCCAA GTAAGCTATC 
GCACCGCCAG CAGCTGTGTG GTCATCGATC AGTTTCTGAG ATTTCAGGTG 
TAGTGGATGA AACCTTGGGA AAGAGGCCTC TGGATGGGCA GAATGATATA 
CTCAGATACA GGTTGTTCAC TAGTACGTGG AATGTTGGTG GTATGACACC 
ATCCAGTGAT CTAGACTTGG AGGATTGGAT GGATTCAACA GCTAACTCCT 
ATGACATCTA CGTTCTTGGG TTCCAAGAGA TAGTGCCACT CAACGCAAGA 
AACGTGCTTG GTCCTAGGAA TAGCTGTATA TCTACAAAGT GGAACTCACT 
GATTGGGGAG GCACTAAACA AAAGGAGGAG AAGAGGAGCA GTGTTGCATC 
AAGAAATCAC AAATAGCAGT GCAACGGAGA GATCTGCGCA GGAAGAACAC 
TTTAGATGCA TCATGAACAA GCAGATGGTG GGCATCTTTA TGTCAGTCTG 
GGTGAGAAGC AATCTTAGGC CATACATTCA CCATCTGAAT GTGTCTTGTG 
TTGGTTCAGG CATCATGGGC TACCTAGGGA ACAAGGGCTC GGTGTCAATT 
CGATTTGTGC TACACGAGAC GAGCTTTTGC TTTGTTTGCT GTCACCTGGC 
TTCAGGCGGC AAACAAGGGG ATGTACTGCT GAGGAACTTT GATGCTGCGG 
ATATACTCGT GAGGACGAGA TTTCCTGGTG GTGCAACCCA AGAATTGCCA 
AAGAAGATCC TTGACCACGA TCAAGTCGTT TTGCTCGGTG ACTTAAATTA 
TAGGATATCC TTGGAAGAGG CTGAGACAAG GTTGTTGGTG GAAGACAAGA 
ATTGGTCCAT CCTGTTAGAG AACGACCAGC TATTGATCGA GTTCTCGACG 
GGTCGGCATT TCGACGGTTG GCAAGAAGGG CTGATCACGT TCTCTCCCAC 
CTACAAGTAC CACCCCAACT CCGATCAGTA CTACTGGTGC TTCGACGGTG 
CGCTTGGAAA AAAGAAGCGT GCCCCAGCAT GGTGTGACCG CATTCTTTGG 
CGCGGTAAGG GCCTGAAGCA AATCCAATAC GACACATGCA ACTACAGGTT 
GTCCGACCAC CGGCCGGTGA GAGCAGTTTT CCATGCCGAA TGTGTGATCA 
GAGGAGATGC AGATTGCGCG TGTGGCTGTA TTGCTCTCAG CTCTTCGAGT 
GAGTGACAAA TGGTCTAGGA GGATACGTGC CATTTAACCA AAGATTTACT 
CATGAGGGCA TGACTGCCAA TCTGAAACTG AACGACTCGA TCATGATTCA 
CGGCAATTTA CCTGTGGATC CGGGATGGAT TTTCAGGTGT GAAATCTGCC 
GATTTTTAGA ATCTTGAATG GTAACTGGAG GCTGGAATGA CAGGAATGCT 
CAATTGGAAC TAGAAGCGTT TAATGGTCTT CTCTTTTTTT AACTCTGACC 
GAGGTTGCAC AAATGCTCAT TGTTCTTTAA ATTTATTGAT GGAGCTTTCT 
CATTTGAACT TGTCCTCCGG GTTAATTTGT TTCCTCGATC ATCTCTTTAC 
TGGAAGAATA TCTGTATTTG TACATTTTGT TCATGAGAAT CGAAACAGAT 
ATGAGAGGGC TTGGAGC

Gene models with high sequence identity

AT2G01900.1 [+] show detail - DNAse I-like superfamily protein
E-value: 2e-114; Score: 409.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Inositol polyphosphate related phosphatase	4.3e-62
HMMPfam	Endonuclease/exonuclease/phosphatase	7.1e-51
HMMPanther	TYPE I INOSITOL POLYPHOSPHATE 5-PHOSPHATASE,	2.1e-125
HMMPanther	INOSITOL 5-PHOSPHATASE	2.1e-125
Gene3D	no description	3.9e-95
superfamily	Endonuclease/exonuclease/phosphatase	1.8e-90

See the detailed result >

AT2G01900.1

Model type: Protein coding
Short Description: DNAse I-like superfamily protein
Computational Description: DNAse I-like superfamily protein; FUNCTIONS IN: hydrolase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: hypocotyl, sepal, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT2G37440.1); Has 2320 Blast hits to 2027 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 735; Fungi - 544; Plants - 769; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).
Link: InterPro Scan - TAIR