K28618

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28618

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28618

Determination of introduced cDNA(s)

  • J023069E14 - Rice Full-length cDNAs - Original: J023069E14

    full reading [+] show sequence

    Nucleotide sequence: J023069E14 - full reading 
    GGTTCGGCTC TTCTTCTTCT TCGTCTTCGT CTTCCTCCAA GAAGAGGAGG 
    AAGAAGAGGA GGAGCGGCGC CAAGAGCTGC TCCTTCGGCT CCACCACGTC 
    TTCGTCGTCG TCGTCGTTGG CGGCGTCATC ATCCGATGAT TCCGCCGCCA 
    CCACGCCGAG ATCCGTGTTG CCGGCGTCGG CGGCGGCGTC CTCCTCCGGC 
    ACCAAAAAGC CGGCGGCGGT GGCCGTGACG CGGGAGGACC TGGAGGTGGC 
    CCTGCGGAGG ATCGTGTCGA GCAAGGAGGA GCTGGCCGCG ATGCTCGCCG 
    AGGCGGAGTG CGCCGGGGAG CTCGTGCTGG AGGAGATCGC GGCCGCGGCG 
    GCGGACGAGG GCGAGCTGAA GGAGACGTTC GCGGTGTTCG ACGCCGACGG 
    GGACGGGAGG ATCTCCGCCG AGGAGCTCCG CGCCGTGCTC GCGTCGCTCG 
    GCGACGAGCT CTGCTCCGTC GACGACTGCC GCCGCATGAT CGGCGGCGTG 
    GACACCGACG GCGACGGGTT CGTCTGCTTC GACGAGTTCG CCCGCATGAT 
    GATGTATGGC TGCGCGTGAT TATATATTGG TTACTAGGTT TTGATCGATG 
    TACGTAATGC ATGTTAATCG ATCGTCTCCT GTATGTACGT GTCGTTCATC 
    TGCTGTTCAT TGTCTCCACT GATTTCTTTT GTTCTCTTTG TACGTAGTAC 
    GAGTTTCACA GAAGAAATGA ACAGAACGGT CAGTTTAGAT CGCT

    Gene models with high sequence identity

    1. AT3G10190.1 [+] show detail - Calcium-binding EF-hand family protein
      E-value: 1e-17; Score: 86.70

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Calcium-binding EF-hand 5.7e-08
    HMMSmart Calcium-binding EF-hand 0.037
    HMMPfam EF-hand 1.5e-08
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    superfamily EF-hand 9.1e-23
    HMMPanther CALMODULIN 2 RELATED 2.1e-35
    HMMPanther CALMODULIN 2.1e-35
    Gene3D EF-hand-like domain 1.5e-18
    ProfileScan EF-HAND 2 16.215
    ProfileScan EF-HAND 2 9.688

    See the detailed result >

    AT3G10190.1

    Model type
    Protein coding
    Short Description
    Calcium-binding EF-hand family protein
    Computational Description
    Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT2G41410.1); Has 18786 Blast hits to 12756 proteins in 1414 species: Archae - 1; Bacteria - 149; Metazoa - 7817; Fungi - 3299; Plants - 4581; Viruses - 0; Other Eukaryotes - 2939 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR