K28622

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28622

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K28622

Determination of introduced cDNA(s)

  • J023117M08 - Rice Full-length cDNAs - Original: J023117M08

    full reading [+] show sequence

    Nucleotide sequence: J023117M08 - full reading 
    GACTGCTAGT GCTGCTAGCC TGAGTAGTTT CGTGTGTCTG AGGATCTCCT 
    GATCTCCTCC CTCCCTCTCT CTCTCTCCAT CCCCATCCAT CCTCCTTTTC 
    CTCCTATTCC CCTGTGGAAT CTCATCTTCT TCTTCATTCC ACTTCTCTTC 
    TCTCTCGTGG TCGCATGATC TCATCAGGAG CGCAGATGCT ACGGCGTCCT 
    TGAGAATTGC AGAGAGGCAA AAGAAGAACA AGCAGAGAGC AAGAACAAGC 
    AGAAGCAGAA GCAAAGAGGC GATGGACGGC GACACGCTGT CGGCGGCGGC 
    GGCGGAGGAC GGGAAGGTGC TGCACGCGTT CCAGACGAGC TTCGTGCAGG 
    TGCAGAGCTT GCTGGACCAG AACCGGGTGC TGATCAACGA GATCAACCAG 
    AACCACGAGT CCAAGGTCCC CGGCGACCTC TCCCGCAACG TCGGCCTCAT 
    CCGCGAGCTC AACAACAACA TCCGCCGCGT CGTCGACCTC TACGCCGACC 
    TCTCCTCCCT CTTCGCCGCC TCCTCCCCCG GCCCCGCCGC CTCCGAGGGC 
    GCCTCCGTCG GCACCGCCGT CCGCCACGCC GGCCACAAGC GTGTCAGGTC 
    CACCCACCTC GACTGAACAA GAACCATTCT CATTTTCTCA ATTAACCACC 
    TCCAATTCTC CAATTCCAAT TCCAATTTCG GCTAGCTTAG CTTAAAGATC 
    GAGCTCTTGC TTGCTTGTAT ATCTAGCTAT AATCTATAAA TCTACATATG 
    AGCAATTAAC GCCCCCTCAC AACTACTCCC GATGTTTCAT ATTATAAGAC 
    TTTCTAACAT TTGCCTACAT TCATATATAT GTTAATGAAT CTAGACACAT 
    ATGTGTGCCT AGATTCATTA ACATCTGTAT GAATGTGGGT AATGCTAGAA 
    AGTCTTATAA CCTAAAACGG AGGTAGTACA ATCATCTTCG GTTCTTTCTT 
    GTAGCTGTTG TTTCATCTTG TTGTAGCTGA TATGATGAGC TATTATATGG 
    ATTTTGATGC AACAATGCCA ATACAAGAGA GTGAGCACTT CTCCG

    Gene models with high sequence identity

    1. AT2G06255.1 [+] show detail - ELF4-like 3
      E-value: 1e-23; Score: 107.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPfam Protein of unknown function DUF1313 1.3e-39

    See the detailed result >

    AT2G06255.1

    Model type
    Protein coding
    Short Description
    ELF4-like 3
    Computational Description
    ELF4-like 3 (ELF4-L3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1313 (InterPro:IPR009741); BEST Arabidopsis thaliana protein match is: ELF4-like 4 (TAIR:AT1G17455.2); Has 149 Blast hits to 148 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR