K28631

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28631

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28631

Determination of introduced cDNA(s)

  • J013134A03 - Rice Full-length cDNAs - Original: J013134A03

    full reading [+] show sequence

    Nucleotide sequence: J013134A03 - full reading 
    GAGGGCTTTG CTCTGGTCTT GCAAGTTAGG TTAGTGATTA GTAGCAGCAG 
    AAAGAGTGGA AGATTTAGAG GATAAGGGAT AGTTTGGTCA TGTCGGATAC 
    AGCCTTGTCG GGCGCGCCGC CGGCGGCGAG GTCGGAGGAT TCGTGGAGTC 
    AGCAGCAGAG CTACAACTTC AGCGGGCGCG TGCTGCTCAC GGCCGTCGTG 
    ATCCTGTTCG TGATCGCCGT CGTCTTCGCC GTCACCCGCG TCTTGCTGTA 
    CTACCTCGTG GTGCGGCCCG GCGGTGGCGG CGGAGGCCGT CGTCGTGGCG 
    GCCTGGCAGG GGGGATCTTG CGGTCGTTGA ACTCGCTCGG CGTGAGCGGT 
    CGCCGCGGGC TGGACGCGTC CGCGCTCGCC GCGCTGCCGG TCACCGCGTA 
    CCGGAAGAAC GGCGGCGGGG GCGGTGGTGG GGAGGGCTCC AACCGCGGCG 
    GGCCTGGCGC CACCGCCGCC GACTGCGCCG TGTGTCTGTC GGAGCTCGCC 
    GACGGCGAGA AGGTGCGGGA GCTGCCCAAC TGCCGGCACG TCTTCCACGT 
    GGAGTGCGTC GACGCGTGGC TGCGCTCCAG GACCACGTGC CCGCTCTGCC 
    GGGCCGAGGC GGAAGTACCC AAGGCGAGGG CTTCGGCGGC GGCGACGGCG 
    ACGGCGCAGT CGTCGTCGTC GCTCGGTGAC GGAGGAATTA CCGTGGTCGT 
    GACCATACAC GGCGGCTCTG ACGAAGCCGG TGGCAGGTCA ACGGCGTTGA 
    CTGGTCAACC GGGATCCTCG AACTCTCCTA GCTGCGAGGC TGCAAGGAAT 
    TGAGGATCGA CGATGACGAC GAACTTCAGA GTTGTGATGT GATTCTTTAT 
    TTTGCTATAG GAGCTCTATC AAGTGTAGAT TGTGAAACGC ATTTGTGATG 
    TGATTCTTTA TTTCTTTCCC ATATATAGCT AAGAAACAAC TGCATAATAC 
    ATTCCCCGC

    Gene models with high sequence identity

    1. AT2G42360.1 [+] show detail - RING/U-box superfamily protein
      E-value: 3e-16; Score: 82.80

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Zinc finger, C3HC4 RING-type 1.3e-07
    ProfileScan Zinc finger, RING-type 12.725
    HMMPanther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW D 1.9e-16
    HMMSmart Zinc finger, RING-CH-type 0.0077
    HMMSmart Zinc finger, RING-type 5.3e-07
    Gene3D no description 8.4e-15
    superfamily RING/U-box 2.2e-16

    See the detailed result >

    AT2G42360.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G42350.1); Has 8862 Blast hits to 8837 proteins in 292 species: Archae - 0; Bacteria - 0; Metazoa - 2202; Fungi - 673; Plants - 4781; Viruses - 60; Other Eukaryotes - 1146 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR