K28636

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28636

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28636

Determination of introduced cDNA(s)

J013050O18 - Rice Full-length cDNAs - Original: J013050O18

full reading [+] show sequence

GAAAATCAAA TTCCAATTCC AATTCCATTT TCTCGATCAA ACACAGCACA 
CAGGATTGGA CGCCGAGACG AGGAGGAAGA AGAAGCGAGC GAAGCTTGTG 
TTGGATCGGA GTGGGGAGGA GATGTTGAGG GCGGTGGCGA GGTGCTGCGG 
GCACTGGCCG CCGGGGGCGG CGGCGGCGGA CGGGATGCTG TGGCAGACGG 
AGCTGAGGCC GCACGCGGCG GGGGAGTTCT CGATGGCGGC GGCGCAGGCG 
AACCTGGCCA TGGAGGACCA GGCGCAGGTG CTCGCCTCCC CCGCCGCCAC 
GCTCGTCGGC GTGTATGACG GGCACGGCGG CGCCGACGCC TCCCGCTTCC 
TCCGCTCCCG CCTCTTCCCC CATGTCCAAC GATTCGAGAA GGAGCAAGGG 
GGGATGAGCA CGGAGGTGAT CCGTAGGGCG TTCGGCGCGG CGGAGGAGGA 
GTTCCTGCAG CAGGTGAGGC AGGCATGGCG GCAGCGGCCG AAGATGGCGG 
CCGTGGGCTC CTGCTGCCTG CTCGGGGCTA TCTCCGGAGA CACGCTCTAC 
GTGGCCAACC TCGGCGACTC CCGCGCCGTG CTCGGCCGCC GCGTGGTCGG 
GGGCGGGGTG GCCGTCGCCG AGCGGCTCAC CGACGAGCAT AACGCGGCCT 
CCGAGGAGGT CCGGCGGGAG CTCACCGCGC TCAACCCGGA CGATGCGCAG 
ATCGTGGTGC ACGCCAGGGG TGCGTGGAGG GTGAAGGGGA TCATTCAGGT 
ATCGAGAACC ATTGGTGATG TTTACTTGAA GAAACAAGAG TATAGCATGG 
ATCCCGTGTT TCGTAACGTT GGTCCCCCTA TTCCTTTGAA GCGGCCAGCT 
CTTAGCGCAG AACCATCGAT TCAAGTTCGC AAGCTCAAAC CAAATGATCT 
GTTCCTGATA TTTGCTTCAG ATGGTCTCTG GGAGCATCTC AGTGACGACG 
CTGCGGTGCA GATTGTCTTC AAGAATCCAA GGACGGTAAG TTCAGATAAC 
ATCTACAGCA TTCGATCATT CCATCACCGG GAGTATATAT TCCCCGTGAA 
TGAACGAGGA GTACTTACAC AATGAGATAA CACCAAGTTC GTGTGAATAT 
TCATGCAGGG TATAGCAAAC AGATTGGTGA AGGCCGCTTT AAAGGAAGCC 
ACGAGGAAGA GGGAGGTCAG CTTCCGTGAT CTGAAGACGA TAGAGAAGGG 
AGTGAGGCGC CATTTCCACG ACGACATCAG CGTCATCGTC GTCTACCTTG 
ACCGCCACCG CGGTCGCCGT CACACAAGGG TCGTCGACTC GAGCAGCAAC 
TGCACCAACG CCCCCGTCGA CATCTACTCC TCCAACTCCG GCCAATCCGT 
GGAGACTCTT CAAGCCCATC GGGGCTCCGG TTGGTAGAAG AAGACTGGGA 
CGCCTCCCTT GAAAAGATCA AGACGGTCTC TTGTTAATTA GTAAAAACAT 
GTAGAGCCGC TGATCAGTAA CACTAGCTGC AGTGGCATCA TCGGAAGAAA 
CGCGGGAATG TACATAAATT AGTAGCGGCG CGTGGCATTT TGATGTGGGG 
AAGAATATTT GATTTTTTTT CCTTCCTTTT TGGGCTAATT TAATTGCAGA 
GATTACTTTT TGCTGTTCTT CTTTGGTTTA TATTTCTGCT GAACCAGCAG 
TTAACTGTTG ACTGGGAATT ACCGCATTTA TGTGCGGCAA GATAATATAG 
TAGTGGTATA ATGGTATTAC ACTGTAACTT GCTGAGATTA TATTAACTAA 
AAGGTGAATC TTAATGGAGA TCTTAC

Gene models with high sequence identity

AT4G33920.1 [+] show detail - Protein phosphatase 2C family protein
E-value: 6e-115; Score: 411.00

InterPro Scan Digest

Program	Description	E-value
PatternScan	Protein phosphatase 2C, manganese/magnesium aspartate binding site	0
HMMPanther	PROTEIN PHOSPHATASE-2C	6.1e-115
HMMPanther	Protein phosphatase 2C	6.1e-115
HMMPanther	PROTEIN PHOSPHATASE-2C	2e-10
HMMPanther	Protein phosphatase 2C	2e-10
superfamily	Protein phosphatase 2C-related	1.5e-45
Gene3D	Protein phosphatase 2C-related	5.3e-44
HMMSmart	Protein phosphatase 2C-related	5.8e-58
HMMPfam	Protein phosphatase 2C, N-terminal	2.6e-38

See the detailed result >

AT4G33920.1

Model type: Protein coding
Short Description: Protein phosphatase 2C family protein
Computational Description: Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: mitochondrion, protein serine/threonine phosphatase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G51370.1); Has 5306 Blast hits to 5302 proteins in 304 species: Archae - 0; Bacteria - 42; Metazoa - 1364; Fungi - 564; Plants - 2405; Viruses - 3; Other Eukaryotes - 928 (source: NCBI BLink).
Link: InterPro Scan - TAIR