K28641

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28641

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28641

Determination of introduced cDNA(s)

  • J023001K02 - Rice Full-length cDNAs - Original: J023001K02

    full reading [+] show sequence

    Nucleotide sequence: J023001K02 - full reading 
    GGTTTGTGCT GTTCCCGTCG CTGGGCGTCG GACACCTGAA CCCCATGGTG 
    GAGCTGGCCA AGCACCTGCA CCGCCAAGGC CTCGGCGTCG TCGTCGCGGT 
    GATCGACCCA CGCGACGATG ATGCCACGTC GGCCGACGCG ACGGCGCGCC 
    TCGCCGCGGC CAACCCTTCC GTCACGTTCC GCATCCTGCC GGCGCCGGCC 
    ACGGCCAGCC CGGACCCCGG CCCGCACCGT GTCAGGCGCA GCCTCGACAC 
    GCTCCGGCTC GCCAACCCGG TGCTCCTGGA GTTCCTCCGC TCGCTGCCGG 
    CCGCTGTCGA CGCGCTCCTG CTCGACATGT TCTGCGTCGA CGCGCTCGAC 
    GTCGCGGCCG AGCTCGCCAT CCCCGCATAC TTCTTCTTCC CCTCCCCGGC 
    AAGCGCCCTC GCCGTCTTCC TCCACCTCCC GCATTACTAC GCCAACGGGA 
    CGTCATTCAG GGAGATGGGA CAAGGAGAGC GAGACGACCA AGATCAGGTT 
    GTACCAGTTC AAGCGGATGA TGGAAGGGAA GGGCGTGCTG GTGAACAGCT 
    TCGACTGGCT GGAGCCCAAG GCCCTGAAAG CGCTCGCCGC CGGTGTCTGC 
    GTGCCCGACA AGCCCACGCC GAGCGTCTAC TGCGTCGGGC CACTGGTCGA 
    CACCGGCAAC AAGGTAGGGA GCGGCGCCGA GAGGCGCCAT GCGTGCCTCG 
    TGTGGCTTGA CGCCCAGCCG CGGCGGAGCG TCGTGTTCCT CTCCTTCGGC 
    AGCCAGGGCG CGCTCCCGGC GGCGCAGCTG AAGGAGATAG CTCGTGGGCT 
    CGAGAGCTCC GGCCACCGCT TCCTGTGGGT CGTGAGGAGC CCGCCGGAGG 
    AGCAGGCCAC ATCACCGGAG CCGGACCTGG AGCGGCTGCT TCCGGCGGGG 
    TTCTTGGAGA GGACGAAGGG CACAGGCATG GTGGCCAAGA ACTGGGCGCC 
    ACAGGCGGAG GTGGTGCAAC ACGAGGCGGT CGGCGTGTTC GTCACGCACT 
    GCGGGTGGAA CTCGACGCTG GAGGCGATCA TGTCGGCGCT GCCGATGATA 
    TGCTGGCCGC TGTACGCGGA GCAGGCGATG AACAAGGTGA TCATGGTGGA 
    GGAGATGAAG ATCGCCGTGC CGCTCGACGG CTACGAGGAA GGAGGGTTGG 
    TGAAGGCCGA GGAAGTGGAG GCGAAGGTGA GGCTGGTGAT GGAGACCGAG 
    GAAGGGAGGA AGCTCAGGGA GAAGCTGGTG GAGACGAGGG ACATGGCGTT 
    GGATGCCGTC AAGGAAGGTG GGTCTTCTGA AGTGGCATTT GATGAGTTCA 
    TGAGAGATTT GGAGAAGAGC AGCTTGGAGA ATGGCGTTTG TAGCTGATCA 
    AGCAGAGTTA CGCTCATGAC CGAATAGAAA TGGTGATGGT TTCTTGATTC 
    CATTTTTTTT TTTAAGGTTG GCGTAACTGA GGACTCTGCA TAACTGTATT 
    GGTGCATCAA TGCGTAGCTG ATGGGTGGGG GCTAACAGAA AGGAAAAATT 
    TCAAAAACCA CCCCAAATAT CACTCTAAGT TTAAGATGCC CCCCTATAAG 
    AAGATTTGTT GCAAATTCCC ACCTCCTAAT TCACCTTATT TTGATTT

    Gene models with high sequence identity

    1. AT3G16520.3 [+] show detail - UDP-glucosyl transferase 88A1
      E-value: 7e-74; Score: 68.20

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam UDP-glucuronosyl/UDP-glucosyltransferase 4e-25
    Gene3D no description 0.00000000000011
    superfamily UDP-Glycosyltransferase/glycogen phosphorylas 1.3e-37
    superfamily UDP-Glycosyltransferase/glycogen phosphorylas 0.000000000012
    PatternScan UDP-glucuronosyl/UDP-glucosyltransferase 0
    HMMPanther UDP-GLUCOSYLTRANSFERASE 3.4e-18
    HMMPanther UDP-glucuronosyl/UDP-glucosyltransferase 3.4e-18
    HMMPanther UDP-GLUCOSYLTRANSFERASE 1.5e-78
    HMMPanther UDP-glucuronosyl/UDP-glucosyltransferase 1.5e-78

    See the detailed result >

    AT3G16520.3

    Model type
    Protein coding
    Short Description
    UDP-glucosyl transferase 88A1
    Computational Description
    UDP-glucosyl transferase 88A1 (UGT88A1); FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 72B3 (TAIR:AT1G01420.1); Has 7523 Blast hits to 7470 proteins in 455 species: Archae - 0; Bacteria - 255; Metazoa - 2062; Fungi - 26; Plants - 5000; Viruses - 120; Other Eukaryotes - 60 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR