K28645

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28645

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28645

Determination of introduced cDNA(s)

  • J023084J18 - Rice Full-length cDNAs - Original: J023084J18

    full reading [+] show sequence

    Nucleotide sequence: J023084J18 - full reading 
    GGGCGTAAAA GAAAATCTGT CTCGTCTCCT CCGCTCCTTG CGCCATCTCG 
    CGGCTGAACA GGGGAGGGGC GCCGATTTCT CCATCTGGCG AGCAGAGCAG 
    GGGGAGGGGA GGGGATCCTG CAGAGATGGC GAGCACAGCA TGCTTTGTGA 
    TTGTGAGTAA AAATGATATT CCAATCTACG AGGCTGAAGT TGGGTCTGCT 
    CCCAAGAGAG AAGATCAAGC TTATCAGCAC CAGTTCATAT TGCACGCTGC 
    ATTAGATGTT GTTCAGGACC TTGCATGGGC TACAAACACA ATGTTTCTGA 
    AGTCAGTAGA CAGATTTGAT GATCTTGTGG TGTCTGTTTA TGTAACTGCT 
    GGTCATACTA GATTTATGTT ACTTCATGAC TCAAGGAGCG AGGATGGAAT 
    AAAAAGTTTC TTCCAGGAGG TTCACGAACT CTACATCAAG ATCTTCCTCA 
    ATCCACTCTA CCTACCTGGT TCTCGCATCA CATCCTCTCA TTTTGATACT 
    AAGGTCAGGG CTCTTGCAAG GAAATACCTG TAGCATATAA CCAGGTGAAG 
    ACTCTGTAAG CTCCACACCG CCCTGTATTC TAGTGAGTAG CACTTGCCTT 
    GTACTAGTTC TTCTACAATT GAATGAACGT AGATCCTGAG ACTAGCCTAG 
    CAGTACCATT TACTATTGAA TGAACATAGA TCCTCTAATG ATCTTGTACT 
    AGAAAAGTGC TCTGTTTGTC TTTTCCGGAG TTAGTAGACG CCCATTCCTT 
    GCCTGTACTG TACTTCTACC CAGAGATTAT ATGTACTAGT AGTATAAAAT 
    ATCTCTCACC CATCGAAGTT TAGTGGGAAA TTT

    Gene models with high sequence identity

    1. AT1G80500.1 [+] show detail - SNARE-like superfamily protein
      E-value: 1e-64; Score: 243.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther MBP-1 INTERACTING PROTEIN-2A 7.1e-58
    HMMPanther Sedlin 7.1e-58
    Gene3D no description 2.4e-47
    HMMPfam Sedlin 2.3e-41
    superfamily Longin-like 3.3e-42

    See the detailed result >

    AT1G80500.1

    Model type
    Protein coding
    Short Description
    SNARE-like superfamily protein
    Computational Description
    SNARE-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, ER to Golgi vesicle-mediated transport; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sedlin (InterPro:IPR006722), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT2G20930.1); Has 584 Blast hits to 580 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 289; Fungi - 112; Plants - 97; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR