K28648

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28648

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28648

Determination of introduced cDNA(s)

  • J023001I20 - Rice Full-length cDNAs - Original: J023001I20

    full reading [+] show sequence

    Nucleotide sequence: J023001I20 - full reading
    GATTCCAGAG CTCGAGGTGG AGATCGCGGG GAGAGGAAGC GAAACAACGA 
    TAGGAGGAAG CGAGACAACG AGAGGTGGTT TCTCGGTTGC GGGTGAGTCG
    TGTTGAAGTG AGCTATGGTG GCGTTGGAGA CGTGTGCGTC GCGCTGAAGG
    CCCCCGGCGT GTGGCGCGTC GACCCGGTGT TCGCCGCGGT GGGTGACCGC
    GTCGTCGCCC TCGGCGGCGC GTGCCAGTTG GCGCTGGGCG AGGGCGAGGA
    CGCCTCGGTG GTGGAGGTAC ACGAAAGCGG CAGCTGGACG GCCTGCGGTC
    CGATGCCAGC CGAGCTGCGG GAGTCCGCGG CGGCGACGTG GCTCTCGGTG
    GCCGCGACGG ATCAGCGAGT GTACCTCACA GACAGATCCA CCGGGTGGGC
    AAGCTGGTTC GATCCGGCGA AGCAGCAGTG GGGACCCACC TGCCGCCTCC
    GCCCTGACGC CACCGTCTCC ACATGGGGCC TCGCCCCCGG CCGCGGCGGC
    GCCGAGCGGC TCGTCCTGTT CGGAGCGAAG CGCTGCGGTA GAGCCGAGCA
    AGCGAAGAGC AGAGTCGTCA TCCAAGCGTG GGAAGTGGAC GGCGACGGCC
    TCGCGCTGTC CCGTGGCGCG GCGCACGACA CGATGCCGGG GGAGATGTCC
    GAGAGGCTGT TCCCCCGTGA CGAGGACGGC GATGAGGAGG ACGAAGAGGA
    GATGTCGCCG TCGATCGGGG TGTGCGGCAA CGCCGCCGGA GGGTACGTGT
    ACAATGCGGC CGACCCGACA ATCGGAGCCG TGCTCTACGA GCTACGTGAC
    GGGGTGGGCA GCGCCGTGGA GCGATGGGAA TGGGTGCCGT GCGCGCCCTC
    GGTCGAGGCC GAGCCGTTGG GACGCTTCAT CCTCGCGTGT TCGCCGGTGG
    GGCTGGACGA GCTCGCGCGT GGTCAACCAG CCGCATGTAC AACCGCACAG
    TGAACTCATG ACTGCCGACG CCCGTCCAAA GCAAGTTAAC CTCAAAGGTT
    GCTTTTGTAA ATAAAGTCCC GCGCAGTAGC ACGGCTACTC GCTAGCGTAC
    ATAAAAAATT ATGTTAAATT TTCTTTACAC ATGATTTTCT TAGAAGTTAT
    TAATAGTTAT CCCGTTGGCT TATAACATTA TAAAAAGTCA AATATTGGTT
    TCCAAGTC

    Gene models with high sequence identity

    1. AT1G23390.1 [+] show detail - Kelch repeat-containing F-box family protein
      E-value: 0.00000000000001; Score: 78.20

     

    InterPro Scan Digest

    See the detailed result >

    AT1G23390.1

    Model type
    Protein coding
    Short Description
    Kelch repeat-containing F-box family protein
    Computational Description
    Kelch repeat-containing F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G24760.1); Has 146 Blast hits to 146 proteins in 15 species: Archae - 0; Bacteria - 1; Metazoa - 1; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR