K28708

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28708

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
T2  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28708

Determination of introduced cDNA(s)

  • J033041C14 - Rice Full-length cDNAs - Original: J033041C14

    full reading [+] show sequence

    Nucleotide sequence: J033041C14 - full reading 
    GACGATTCCA GCCGATCGCT GCGTAGCTCG CCGGATGGCG CAGCAGCAGC 
    AGCAGCAGGG GTCGGGGTCG GGGTCGGCGT CGGCGTCGAG CTCCAGCTCG 
    GGGCTGCACC TGCTGGCGTC GCCGTTCGGG GACACCACCT ACACCAAGGT 
    GTTCGTGGGC GGGCTCGCGT GGGAGACCAC CAGCGAGAGG CTCCGCCGCT 
    TCTACGACCG CTTCGGGGAG ATCCTCGAGG CCGTCGTCAT CACCGACCGC 
    CACTCCGGCC GCTCCAAGGG CTACGGCTTC GTGACGTTCC GCGATCCTGA 
    GTCGGCGAGG AAGGCATGCG AGGACCCGAC GCCGGTGATC GACGGCAGGC 
    GTGCCAATTG TAACCTGGCG TCGCTTGGCC GCGCTCAGCC TGCAGTTCCT 
    CTCGGGAGGC CAAGATCAGC TGGGTCCTAC TTTGGCGTTC CAGTTCCAAG 
    GGGTGTTTAT GTAGGGGGTT ATGGTCAGCA CCGGACACTT CCTCTTGGGT 
    ATTACCAAGG ATTCCCGGTT CCGCAATACA GCTACACTAC ATATGGGACA 
    GAATACATCT ATCCACAGGG TACATTAAAC CCATATGTTG GTCAGCAATA 
    TGTTCCAATT TATGGAGTTT CATCCGCAGC AAATACTGCT AGCCAACCAT 
    TTAGCCAGTT CAGCCCGTCC ATTTCTGGTG GGGGTAATGG TTATGTGGCT 
    ATTCATGGTT ACAATGTGCC AGGAAATCCA TTTGTACAGT TAACTGGATC 
    AAACTTTAGC AGTGCATCGC CTACACCTCG GCCCACCATT CAGGCCCCCT 
    TTTTAGTTGC ACCGGTTCCT ACTCACCCGC ACTTGGTCCT CCCAGCTCAC 
    TCACCTCAGT TTACACAGGC TAGTGGTTCA GACCAAAGAG CAAGCTGAAC 
    TATGCTGCCA AACATTTGTA CCTTGAGGTA CCCTTAGATT GCAGCAGGAC 
    AAAAGAGCAG TGCTGCTGTA TTTGAAGTAC TGGTTCTTAC CTGGCAAGTA 
    ATCCCCCTTG CATTCATAAG GTTGCCCTTA TCATGGTCAT CAGATGTACC 
    TGGAATCATG ATGTTGCCCC GATGGATGGG ACAATGATCC AAGAGCAACG 
    GTTGCTCTTG TCAGTTTTGC TTGGTTACAT CCTATGTCTC AATGGGACTG 
    CGACCATTGC TGCAGCTTGA AGCTCTAGAT ACAGCATTAT TGATCCTGTA 
    TCTGACAGCT CATTAGCCCA TGGAGATATA CTGGATGCTG GAATGGAGTC 
    CAGCACTCTG TAAGATGACT AATCCCCTTG GATTAGTCAT GATGCACTCA 
    TATGATTGTT CACCTAAACT CCTGAAGAAT CATCAAGCTA CTATGTGGTT 
    GATTATATCC CAGTGTTGAA GTCTGGCACA AGTCCAACAA ATGTAGCCCG 
    TCCCGTCAGT CTTGTGTCTG TCTATGGTCA TCGTCGTGAT CTATGCTTGA 
    TCGGCCTTTG GAGGTATAAA TAGTTATTGC GTCCGCTTCA CTCATCATGT 
    CCAAAATGTT GGACCAAGAT GGTCCTTCCT CCTGTATCTG TAACCCAAGT 
    GTCTACCGGA ACTGCTCAGG GTCGTTACTC GTTACCAACT GGTAGCGAGG 
    TCACGAGGAC TATCTTCTAT GGTGTTACTG GTATCGGTAT CAGAACTACC 
    GTCTATTGTG TTACTGGTAT CGGTATCAGA ACTGTTGTTA TGTGTTTAAT 
    TTTTCATTGC TATGTGCTCA GCAGTTCCTC GACTTCCGAG AACGGCACTT 
    TGTTGTCCGA CCAAAATAAA TCAGTTCGGA TGAGAAACCC ATGCTTTGGG 
    GTCTTATCGG TGTTGTGTAA GCCTGGATTG TTAAAACTTG TACTATTTGT 
    ACAAATTGTT TTGCTGTTTT GCAGTGATGT GTATTATGTG AAATTGTTTC

    Gene models with high sequence identity

    1. AT1G76460.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 1e-67; Score: 254.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther RNA-BINDING PROTEIN-RELATED 4e-65
    HMMPanther RNA-BINDING PROTEIN 4e-65
    Gene3D Nucleotide-binding, alpha-beta plait 5.4e-21
    HMMPfam RNA recognition motif, RNP-1 2.5e-16
    ProfileScan RNA recognition motif, RNP-1 17.148
    superfamily RNA-binding domain, RBD 1.6e-22
    HMMSmart RNA recognition motif, RNP-1 9.1e-22

    See the detailed result >

    AT1G76460.1

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G20880.2); Has 4261 Blast hits to 4252 proteins in 371 species: Archae - 0; Bacteria - 0; Metazoa - 1989; Fungi - 541; Plants - 1112; Viruses - 30; Other Eukaryotes - 589 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR