K28711

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28711

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28711

Determination of introduced cDNA(s)

  • J013001J18 - Rice Full-length cDNAs - Original: J013001J18

    full reading [+] show sequence

    Nucleotide sequence: J013001J18 - full reading 
    GGCTTGCACA CTTGCACCCA CCCTCTCTCC TCCATCCAGC ACCGACCATG 
    GCCGCCGTCA CGGCTGCGGC CGTCTCCACC TCCGCCGCTG CTGCAGTCAC 
    CAAGGCATCG CCGTCCCCCG CCCACTGCTT CCTGCCATGC CCGCCAAGAA 
    CCAGAGCCGC CCACCAGCGC GGCCTGCTGC TGCGCGCGCA GGTGTCCACC 
    ACCGACGCCG CCGCCGTCGC CGCCGCGCCG GCCAAGAAGG AGAAGATATC 
    CAAGAAGCAT GACGAGGGCG TCGTCACCAA CAAGTACAGG CCCAAGGAGC 
    CCTACGTCGG CAAGTGCCTC CTCAACACCA AGATCACCGC CGACGACGCG 
    CCCGGCGAGA CATGGCACAT GGTCTTCAGC ACCGAGGGTG AGATCCCCTA 
    CAGAGAGGGG CAGTCCATCG GCGTCATCGC CGACGGCGTC GACAAGAACG 
    GCAAGCCGCA CAAGCTCAGG CTCTACTCCA TCGCCAGCAG CGCTCTCGGC 
    GACTTCGGCG ACTCCAAGAC CGTTTCACTC TGCGTCAAGA GGCTCGTTTA 
    CACCAACGAC CAGGGAGAGA TTGTCAAAGG AGTCTGCTCC AACTTCCTCT 
    GTGACTTGAA GCCTGGTTCT GATGTCAAGA TAACCGGACC AGTAGGCAAA 
    GAAATGCTCA TGCCCAAAGA TCCCAATGCT AATATTATAA TGCTTGCGAC 
    CGGTACTGGT ATTGCCCCGT TCCGCTCATT CTTGTGGAAA ATGTTTTTTG 
    AGAAGTATGA TGACTACAAG TTCAATGGTC TGGCTTGGCT CTTCTTGGGA 
    GTCCCAACTA GCAGTTCTTT ACTCTACAAG GAGGAGTTTG ACAAAATGAA 
    GGCGAAAGCG CCAGAGAACT TCCGGGTCGA TTATGCTGTG AGCAGGGAGC 
    AGACCAATGC TCAAGGAGAG AAGATGTACA TTCAGACCAG GATGGCAGAG 
    TACAAGGAAG AGCTGTGGGA GCTCCTGAAG AAGGACCACA CCTATGTGTA 
    CATGTGTGGA CTGAAAGGCA TGGAGAAGGG TATTGATGAC ATTATGGTGT 
    CATTGGCTGC AAAAGATGGA ATCGACTGGG CTGATTACAA GAAGCAACTG 
    AAGAAGGGCG AGCAATGGAA CGTGGAAGTC TACTAATTCT TCCAATTTTC 
    CTCACATCTG TTTCTTTTTT TTCTTCCATT TGTATCTGTG TGCACATCTG 
    TGCCTGTGAT CACTCTATAA TGTTAGATAG GCGTATATAT ATACTGTTTG 
    TCATGTTGGT TAAATTCAAG CTTCATATAA GAATTACTAC TTATGTCTGA 
    TCCAAATACT ACTATGGTCA AGTCAAGAGT AATAATAATA ATAATGCAAT 
    GCAGTTCACT C

    Gene models with high sequence identity

    1. AT1G20020.1 [+] show detail - ferredoxin-NADP(+)-oxidoreductase 2
      E-value: 2e-154; Score: 542.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPfam Oxidoreductase FAD/NAD(P)-binding 4e-27
    HMMPfam Oxidoreductase, FAD-binding domain 5.8e-05
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 1.2e-26
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 1.2e-26
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 1.2e-26
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 1.2e-26
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 1.2e-26
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 1.2e-26
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 1.2e-26
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 1.2e-26
    HMMPIR Ferredoxin--NADP reductase 2.8e-274
    ProfileScan Ferredoxin reductase-type FAD-binding domain 13.279
    Gene3D no description 1.4e-48
    Gene3D no description 2.2e-47
    superfamily Ferredoxin reductase-like, C-terminal NADP-li 9.3e-54
    superfamily Riboflavin synthase-like beta-barrel 3e-43
    HMMPanther Ferredoxin Reductase 1e-138
    HMMPanther FLAVODOXIN-RELATED 1e-138

    See the detailed result >

    AT1G20020.1

    Model type
    Protein coding
    Short Description
    ferredoxin-NADP(+)-oxidoreductase 2
    Curator Summary
    Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stroma
    Computational Description
    ferredoxin-NADP(+)-oxidoreductase 2 (FNR2); FUNCTIONS IN: oxidoreductase activity, poly(U) RNA binding, NADPH dehydrogenase activity; INVOLVED IN: oxidation reduction, defense response to fungus, incompatible interaction, defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 1 (TAIR:AT5G66190.1); Has 6774 Blast hits to 6774 proteins in 1708 species: Archae - 20; Bacteria - 3604; Metazoa - 802; Fungi - 759; Plants - 616; Viruses - 0; Other Eukaryotes - 973 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR