K28731

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28731

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
  • present in greater numbers in organism (PATO:0000470)
    (Cauline leaf::Number::many)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28731

Determination of introduced cDNA(s)

  • J033003A15 - Rice Full-length cDNAs - Original: J033003A15

    full reading [+] show sequence

    Nucleotide sequence: J033003A15 - full reading
    GGCCGCCGCC ACCCGCCGCG AACGACGCGC CTTCCCGACG CCGATCGAGC 
    GCACTCCTCC CTGCTATATT TGGGTACACG GTGTAGTCCG ATCTGTTTCA
    TCGATTAACC TTGCTCGATT GATTGATCCC GTCCCCTCCT TTGATCTGAG
    ATTCAGAATT ACTTCTTGTG TTATTGTCAT CTACAAAAGG TGCAGGCAAC
    GTGCTCGACG GAATGCTGAC CACGAGCGAC ATGGCGTCGG CCGCCGGCGG
    TGCCAGCGGC AAGGACTGGT TTGACTGCCT CCCCGATGAT CTAGTGCACC
    ACGTCCTGTC CTTCTTGCCA GCGCTGGACG CCGTCCGCAC CAGCGTTCTG
    TCGCGGAGGT GGCGCGACTT CTGGGTCTCC ATGCCTCGCC TCAACGTCGA
    CGTAGGTGAC TTCCGCGACG ACGGTCAGTT CGAGAATTTC ACGGTCCACG
    CGTTGCCTCT CTTGGACAGC AGCGTGCCCT TGCGCTCTCT CCGTCTCCGT
    TCTTCCCTAC ACTACCTTTC TGCCTTGTGG GTCAACCATG CTGTCAAGCG
    TAAGGTTGCT GTGCTTGAGT ACTCTGGGCG TGCGGAACTG TGTAGCTCTG
    TTGATGCCAG CCTCAGCTTG GCTTCTTCAT ATCTGACTAA GGTGGTGCTC
    AAACATTTTG ATTTTGATTA TGGCCAGTTT TGGCCATTGA TCGATGCATG
    CCCTGCCCTG GAAAATCTGG AGCTTTTGGA TGTTTGGACC TTCTACTCAG
    TAACGATCTC GTCAAGTTCA CTCAAGCATC TGCGGATCGT CAGCTGTTTA
    TTTTACAATG GATTCCGGAT CAATGCTCCA AATCTTCTCA CAATGTGCCT
    TGACGATGTA AATGTCAATG GTCCTTTGGG ACATGATTCT TTGGTCTTGG
    AGAACTTGTC ATCCTTAATG ACTGCTTCAG TCAGTGTATA CCATTGTTTC
    TATCCTAAAC ATTATGTCAA AACTGAGCTG CATTTTTTTC ATGGCCTTTC
    ACATGCTAGA AACCTAAAAT TGATAGCTCC ACTATATGAG GCTCTGTTTG
    AGGAGGGCTT ACCAACATGC CCGGTCTTTA ACAACTTAAA ATGCTTGGTA
    CTTGGTGACT GGTGCATGGC TTTTGACCTT TATCCACTAC GTTGTATCCT
    TAGGCAGTCA CCAATGTTAG AGGAGCTCTG TGTGGAACTT GGGGAGGAGG
    AGTGTGAGAA TTGCAAGAAC AGAAAACCAG CTTTCTCATA TGGGGAAATA
    TCACCATTTT GGTGTGATCG CCTGAAGACC ATCAAAATCA AATGTACCGA
    ACATGATGAG AGATTTGTCG CTTTGCTGCA ACTGTTTTGC AAGATCTTAG
    TCTGTATTGA GGAAGTTGAC ATAGATAGGC AGTGGGTTAG TGCTCAGCCT
    CCCGATTCGT CTGAGCTTTG AAGGCCACAG AAAAACCTGG CAAATGTCTA
    ATGATTTGTA TCCTTATCAT CTACTCCCCC GTCCAAAAAA ACTAAATCTC
    GTACTAGATA TTGGTACGTT GTCCAGATTC ATAATATTAT AATATGTCAA
    CGTCTAATAT GAGGTTTAGT TTTTTTAGAC GGAGGGAGTA GTACACAACC
    TTGATAGCAC TGGCAGGAGT TCGTGCTACC TTGCGGGCTT GTGATATCTA
    TTTTGTTGCC ATGGAGATGC CTGGCGCCAT GATAATTAAG ACTTTCGTTT
    GATTTATGAA CC

    Gene models with high sequence identity

    1. AT5G22660.2 [+] show detail - FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein
      E-value: 2e-11; Score: 68.20

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam F-box domain, cyclin-like 3.7e-07
    superfamily F-box domain, Skp2-like 4.4e-12
    HMMSmart F-box domain, cyclin-like 1.9e-05

    See the detailed result >

    AT5G22660.2

    Model type
    Protein coding
    Short Description
    FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein
    Computational Description
    FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G22700.1); Has 2291 Blast hits to 2253 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 2290; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR