K28731

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased width (PATO:0000599) (Cauline leaf::Shape::narrow) present in greater numbers in organism (PATO:0000470) (Cauline leaf::Number::many)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) decreased width (PATO:0000599) (Rosette leaf::Shape::narrow) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many) abnormal (PATO:0000460) (Rosette leaf::Others)
	seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997) (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28731

Determination of introduced cDNA(s)

J033003A15 - Rice Full-length cDNAs - Original: J033003A15

full reading [+] show sequence

GGCCGCCGCC ACCCGCCGCG AACGACGCGC CTTCCCGACG CCGATCGAGC 
GCACTCCTCC CTGCTATATT TGGGTACACG GTGTAGTCCG ATCTGTTTCA 
TCGATTAACC TTGCTCGATT GATTGATCCC GTCCCCTCCT TTGATCTGAG 
ATTCAGAATT ACTTCTTGTG TTATTGTCAT CTACAAAAGG TGCAGGCAAC 
GTGCTCGACG GAATGCTGAC CACGAGCGAC ATGGCGTCGG CCGCCGGCGG 
TGCCAGCGGC AAGGACTGGT TTGACTGCCT CCCCGATGAT CTAGTGCACC 
ACGTCCTGTC CTTCTTGCCA GCGCTGGACG CCGTCCGCAC CAGCGTTCTG 
TCGCGGAGGT GGCGCGACTT CTGGGTCTCC ATGCCTCGCC TCAACGTCGA 
CGTAGGTGAC TTCCGCGACG ACGGTCAGTT CGAGAATTTC ACGGTCCACG 
CGTTGCCTCT CTTGGACAGC AGCGTGCCCT TGCGCTCTCT CCGTCTCCGT 
TCTTCCCTAC ACTACCTTTC TGCCTTGTGG GTCAACCATG CTGTCAAGCG 
TAAGGTTGCT GTGCTTGAGT ACTCTGGGCG TGCGGAACTG TGTAGCTCTG 
TTGATGCCAG CCTCAGCTTG GCTTCTTCAT ATCTGACTAA GGTGGTGCTC 
AAACATTTTG ATTTTGATTA TGGCCAGTTT TGGCCATTGA TCGATGCATG 
CCCTGCCCTG GAAAATCTGG AGCTTTTGGA TGTTTGGACC TTCTACTCAG 
TAACGATCTC GTCAAGTTCA CTCAAGCATC TGCGGATCGT CAGCTGTTTA 
TTTTACAATG GATTCCGGAT CAATGCTCCA AATCTTCTCA CAATGTGCCT 
TGACGATGTA AATGTCAATG GTCCTTTGGG ACATGATTCT TTGGTCTTGG 
AGAACTTGTC ATCCTTAATG ACTGCTTCAG TCAGTGTATA CCATTGTTTC 
TATCCTAAAC ATTATGTCAA AACTGAGCTG CATTTTTTTC ATGGCCTTTC 
ACATGCTAGA AACCTAAAAT TGATAGCTCC ACTATATGAG GCTCTGTTTG 
AGGAGGGCTT ACCAACATGC CCGGTCTTTA ACAACTTAAA ATGCTTGGTA 
CTTGGTGACT GGTGCATGGC TTTTGACCTT TATCCACTAC GTTGTATCCT 
TAGGCAGTCA CCAATGTTAG AGGAGCTCTG TGTGGAACTT GGGGAGGAGG 
AGTGTGAGAA TTGCAAGAAC AGAAAACCAG CTTTCTCATA TGGGGAAATA 
TCACCATTTT GGTGTGATCG CCTGAAGACC ATCAAAATCA AATGTACCGA 
ACATGATGAG AGATTTGTCG CTTTGCTGCA ACTGTTTTGC AAGATCTTAG 
TCTGTATTGA GGAAGTTGAC ATAGATAGGC AGTGGGTTAG TGCTCAGCCT 
CCCGATTCGT CTGAGCTTTG AAGGCCACAG AAAAACCTGG CAAATGTCTA 
ATGATTTGTA TCCTTATCAT CTACTCCCCC GTCCAAAAAA ACTAAATCTC 
GTACTAGATA TTGGTACGTT GTCCAGATTC ATAATATTAT AATATGTCAA 
CGTCTAATAT GAGGTTTAGT TTTTTTAGAC GGAGGGAGTA GTACACAACC 
TTGATAGCAC TGGCAGGAGT TCGTGCTACC TTGCGGGCTT GTGATATCTA 
TTTTGTTGCC ATGGAGATGC CTGGCGCCAT GATAATTAAG ACTTTCGTTT 
GATTTATGAA CC

Gene models with high sequence identity

AT5G22660.2 [+] show detail - FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein
E-value: 0.00000000002; Score: 68.20

InterPro Scan Digest

Program	Description	E-value
HMMPfam	F-box domain, cyclin-like	0.00000037
superfamily	F-box domain, Skp2-like	0.0000000000044
HMMSmart	F-box domain, cyclin-like	0.000019

See the detailed result >

AT5G22660.2

Model type: Protein coding
Short Description: FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein
Computational Description: FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G22700.1); Has 2291 Blast hits to 2253 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 2290; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR