K28731

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28731

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
  • present in greater numbers in organism (PATO:0000470)
    (Cauline leaf::Number::many)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28731

Determination of introduced cDNA(s)

  • J033003A15 - Rice Full-length cDNAs - Original: J033003A15

    full reading [+] show sequence

    Nucleotide sequence: J033003A15 - full reading 
    GGCCGCCGCC ACCCGCCGCG AACGACGCGC CTTCCCGACG CCGATCGAGC 
    GCACTCCTCC CTGCTATATT TGGGTACACG GTGTAGTCCG ATCTGTTTCA 
    TCGATTAACC TTGCTCGATT GATTGATCCC GTCCCCTCCT TTGATCTGAG 
    ATTCAGAATT ACTTCTTGTG TTATTGTCAT CTACAAAAGG TGCAGGCAAC 
    GTGCTCGACG GAATGCTGAC CACGAGCGAC ATGGCGTCGG CCGCCGGCGG 
    TGCCAGCGGC AAGGACTGGT TTGACTGCCT CCCCGATGAT CTAGTGCACC 
    ACGTCCTGTC CTTCTTGCCA GCGCTGGACG CCGTCCGCAC CAGCGTTCTG 
    TCGCGGAGGT GGCGCGACTT CTGGGTCTCC ATGCCTCGCC TCAACGTCGA 
    CGTAGGTGAC TTCCGCGACG ACGGTCAGTT CGAGAATTTC ACGGTCCACG 
    CGTTGCCTCT CTTGGACAGC AGCGTGCCCT TGCGCTCTCT CCGTCTCCGT 
    TCTTCCCTAC ACTACCTTTC TGCCTTGTGG GTCAACCATG CTGTCAAGCG 
    TAAGGTTGCT GTGCTTGAGT ACTCTGGGCG TGCGGAACTG TGTAGCTCTG 
    TTGATGCCAG CCTCAGCTTG GCTTCTTCAT ATCTGACTAA GGTGGTGCTC 
    AAACATTTTG ATTTTGATTA TGGCCAGTTT TGGCCATTGA TCGATGCATG 
    CCCTGCCCTG GAAAATCTGG AGCTTTTGGA TGTTTGGACC TTCTACTCAG 
    TAACGATCTC GTCAAGTTCA CTCAAGCATC TGCGGATCGT CAGCTGTTTA 
    TTTTACAATG GATTCCGGAT CAATGCTCCA AATCTTCTCA CAATGTGCCT 
    TGACGATGTA AATGTCAATG GTCCTTTGGG ACATGATTCT TTGGTCTTGG 
    AGAACTTGTC ATCCTTAATG ACTGCTTCAG TCAGTGTATA CCATTGTTTC 
    TATCCTAAAC ATTATGTCAA AACTGAGCTG CATTTTTTTC ATGGCCTTTC 
    ACATGCTAGA AACCTAAAAT TGATAGCTCC ACTATATGAG GCTCTGTTTG 
    AGGAGGGCTT ACCAACATGC CCGGTCTTTA ACAACTTAAA ATGCTTGGTA 
    CTTGGTGACT GGTGCATGGC TTTTGACCTT TATCCACTAC GTTGTATCCT 
    TAGGCAGTCA CCAATGTTAG AGGAGCTCTG TGTGGAACTT GGGGAGGAGG 
    AGTGTGAGAA TTGCAAGAAC AGAAAACCAG CTTTCTCATA TGGGGAAATA 
    TCACCATTTT GGTGTGATCG CCTGAAGACC ATCAAAATCA AATGTACCGA 
    ACATGATGAG AGATTTGTCG CTTTGCTGCA ACTGTTTTGC AAGATCTTAG 
    TCTGTATTGA GGAAGTTGAC ATAGATAGGC AGTGGGTTAG TGCTCAGCCT 
    CCCGATTCGT CTGAGCTTTG AAGGCCACAG AAAAACCTGG CAAATGTCTA 
    ATGATTTGTA TCCTTATCAT CTACTCCCCC GTCCAAAAAA ACTAAATCTC 
    GTACTAGATA TTGGTACGTT GTCCAGATTC ATAATATTAT AATATGTCAA 
    CGTCTAATAT GAGGTTTAGT TTTTTTAGAC GGAGGGAGTA GTACACAACC 
    TTGATAGCAC TGGCAGGAGT TCGTGCTACC TTGCGGGCTT GTGATATCTA 
    TTTTGTTGCC ATGGAGATGC CTGGCGCCAT GATAATTAAG ACTTTCGTTT 
    GATTTATGAA CC

    Gene models with high sequence identity

    1. AT5G22660.2 [+] show detail - FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein
      E-value: 2e-11; Score: 68.20

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam F-box domain, cyclin-like 3.7e-07
    superfamily F-box domain, Skp2-like 4.4e-12
    HMMSmart F-box domain, cyclin-like 1.9e-05

    See the detailed result >

    AT5G22660.2

    Model type
    Protein coding
    Short Description
    FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein
    Computational Description
    FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G22700.1); Has 2291 Blast hits to 2253 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 2290; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR