K28735

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28735

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28735

Determination of introduced cDNA(s)

  • J013059L24 - Rice Full-length cDNAs - Original: J013059L24

    full reading [+] show sequence

    Nucleotide sequence: J013059L24 - full reading 
    GGTGGTGCTC GGCACGTCGG TTGTTGCTGT TGCTGCTGCT GCTCCTCCCG 
    TTTTCCGGTG AGCTCTCGTG GACTCCGCTT GACTTGATGT GGGGGTGAAT 
    CTGTTTGATA GGTGGGGGGG ATTTTGCGGT GTTCGTGTGA GTTTTGGTGT 
    GGATCTGCTT GTTCCTGACT TCCTGTGTGT TTGAGGGTAA TCTGGGTTAT 
    TTTTACGGGT TGTTTTTGGT GTTTTTTGAG GAGTTTTTTG GTCGGATGGG 
    TGGTAGGTCT GGATGGATTG TTTTGGGGCA GCTTTGATCG GATTTTACCC 
    TGGGTTGGAT AACTGATCGG TGTTTTTCTG TTCGTGGTTT GGTGTTGATT 
    TTTCGGTTAG TGCATCGGTG TTTTCTGTAA CTGCTGCTCT CCGATTTTGA 
    GTTTTATTTT TTTTCTGTTT TCCCCTTCAG TTCTAGCCTC GGTTCCATGG 
    CTGAACCTTC GATTTGATTT TGTTTTTTTT TCTTATTTCG TGAGTTACTA 
    ATCTTCGATA TTATCGACTA ATTTCACTGT GTTTTAATCG TATCGTCAGT 
    TAGAGAGTTG AGATCTAACA GTCGTTGTGT TCCAGTGTTT TCCCCATTTG 
    GATTTTTCGA TCTCATCACT CCTGACGAAA AATTTCTCAT CGCCTTCTGT 
    TTGGTTTGGT TTGGTTTTTC TCGCGATTTG CCGCAGATCG CAGCCATGGG 
    AACCCGCAGC GTGGCCTTGG TGCTCCTCGC GGCCGTGCTG CTCCAAGCCC 
    TCCTCCCCGC TTCGGCGGCG GAGGGTTTGG TGCGGATCGC GCTGAAGAAG 
    CGCCCGATCG ACGAGAACAG CCGCGTCGCC GCGCGACTCT CCGGCGAGGA 
    AGGGGCGCGC CGGCTGGGCC TCCGCGGCGC CAACTCCCTT GGCGGCGGCG 
    GGGGTGAGGG CGACATCGTG GCGCTGAAGA ACTACATGAA CGCGCAGTAC 
    TTCGGGGAGA TTGGCGTCGG CACTCCGCCG CAGAAATTCA CCGTCATCTT 
    CGACACTGGC AGCTCCAACC TCTGGGTGCC GTCGGCCAAG TGCTACTTCT 
    CGATTGCGTG CTTCTTCCAC TCTCGCTACA AGTCCGGACA GTCGAGCACT 
    TATCAGAAGA ATGGAAAACC AGCTGCCATT CAGTATGGCA CTGGTTCAAT 
    TGCTGGGTTT TTCAGCGAGG ATAGTGTTAC AGTAGGTGAT CTGGTTGTGA 
    AAGATCAGGA ATTCATTGAA GCTACCAAGG AGCCAGGTCT TACTTTCATG 
    GTTGCAAAAT TTGATGGCAT TCTTGGGCTT GGATTTCAGG AAATATCCGT 
    TGGAGATGCA GTACCTGTGT GGTATAAGAT GGTAGAGCAA GGTCTTGTCA 
    GTGAGCCTGT TTTCTCCTTC TGGTTCAACC GTCATTCTGA TGAAGGAGAA 
    GGTGGTGAAA TTGTGTTTGG AGGAATGGAT CCTAGCCACT ACAAGGGCAA 
    CCATACATAT GTTCCAGTCT CTCAGAAGGG ATATTGGCAG TTTGAGATGG 
    GCGATGTCCT GATTGGAGGA AAGACCACAG GATTTTGTGC TAGCGGTTGT 
    TCAGCTATAG CAGACTCTGG AACATCATTG CTTGCTGGCC CCACAGCCAT 
    AATCACTGAA ATCAATGAGA AGATCGGTGC TACTGGGGTA GTCAGCCAAG 
    AATGCAAGAC AGTTGTTTCT CAATATGGAC AACAGATCCT AGATCTGTTG 
    CTTGCTGAGG CACAGCCATC AAAAATCTGC TCTCAGGTTG GTCTGTGTAC 
    TTTTGATGGG AAGCATGGTG TTAGTGCTGG AATTAAGAGC GTAGTAGATG 
    ATGAAGCTGG GGAATCGAAT GGTCTCCAAA GTGGTCCCAT GTGCAATGCC 
    TGTGAGATGG CTGTTGTATG GATGCAGAAC CAACTTGCAC AGAACAAGAC 
    TCAGGATCTC ATCTTGAACT ACATTAATCA GCTCTGTGAC AAGCTCCCAA 
    GTCCAATGGG AGAATCATCT GTGGACTGTG GCAGCCTTGC ATCCATGCCT 
    GAGATTTCAT TCACCATTGG AGGCAAAAAG TTTGCACTGA AGCCAGAAGA 
    GTATATTCTG AAGGTTGGTG AAGGAGCTGC TGCCCAGTGC ATCAGTGGAT 
    TCACAGCCAT GGACATCCCT CCTCCCCGTG GTCCTCTCTG GATCCTGGGT 
    GACGTTTTCA TGGGTGCCTA CCATACCGTG TTCGACTACG GCAAGATGAG 
    GGTTGGCTTC GCGAAGTCGG CCTAAACGTG TTGTTGTCAC GTTCCTAATG 
    ACGAGGTGGA CGCATACGCC GAGAGAAGAA GACCGTAGCT TTTAACTAGC 
    GTATTTATCC GGCGATGTGT GTATATATGC ATGCTACATA ACATGTTTAT 
    GTTTTCCAAG GCCTGAGATG GCGCCCGTCT ATTTTAGCTT GGCAAGAATA 
    TCTCGGACCA GTCTCTGTTC GAATTCTCGT ACTGATATGT GAACTTCTGA 
    TAACATGTGC ACTGTGTTTT GTGACTGAAT TGCTAGTCAG TCCGAAGGTT 
    AATTATCCCA TGGTTGATGT GAAGAGAGCC ACCGGATTAT TGC

    Gene models with high sequence identity

    1. AT1G11910.1 [+] show detail - aspartic proteinase A1
      E-value: 0; Score: 707.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Saposin B 13.418
    ProfileScan Saposin B 12.419
    Gene3D Peptidase aspartic, catalytic 6e-86
    Gene3D Peptidase aspartic, catalytic 1.1e-20
    HMMPanther ASPARTIC PROTEINASE-RELATED 2.9e-251
    HMMPanther Peptidase A1 2.9e-251
    PatternScan Peptidase aspartic, active site 0
    PatternScan Peptidase aspartic, active site 0
    FPrintScan Peptidase A1 3.6e-29
    FPrintScan Peptidase A1 3.6e-29
    FPrintScan Peptidase A1 3.6e-29
    FPrintScan Peptidase A1 3.6e-29
    HMMPfam Peptidase A1 2.4e-130
    HMMPfam Saposin-like type B, 1 0.0000000000000046
    HMMPfam Saposin-like type B, 2 0.000000000000067
    superfamily Peptidase aspartic 7.1e-127
    superfamily Saposin-like 5.5e-29

    See the detailed result >

    AT1G11910.1

    Model type
    Protein coding
    Short Description
    aspartic proteinase A1
    Curator Summary
    Encodes an aspartic proteinase that forms a heterodimer and is stable over a broad pH range (ph 3-8).
    Computational Description
    aspartic proteinase A1 (APA1); FUNCTIONS IN: endopeptidase activity; INVOLVED IN: proteolysis, response to salt stress; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Saposin-like (InterPro:IPR011001), Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138), Saposin B (InterPro:IPR008139), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Saposin-like aspartyl protease family protein (TAIR:AT1G62290.2); Has 7443 Blast hits to 5200 proteins in 420 species: Archae - 0; Bacteria - 2; Metazoa - 4134; Fungi - 1703; Plants - 675; Viruses - 0; Other Eukaryotes - 929 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR