K28740

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28740

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28740

Determination of introduced cDNA(s)

  • J033132H20 - Rice Full-length cDNAs - Original: J033132H20

    full reading [+] show sequence

    Nucleotide sequence: J033132H20 - full reading 
    GGGACGGGAC CGAGGACAGA TCACATCACC ACAGTGTGGG TGTAATTAAG 
    GTTGGGAAAC GAGTAATTAG CTTAGGTTAA TTAGGATTCG ATCCATCGAT 
    ACGATGGCGT TGAGAAGAAT GGGCATCATT CTTGTGCTCT TGGCCATTGC 
    TACTCTGCTC TCGCCGGCAG TGTCCGCACG GTTCATCTCT CTGCCCACCG 
    ACCATCTTCC AATCACTACG CCGCCCCTCG CCGACGGCCT CGGCTTCGAC 
    CTCTACAGCG ACTCGTGCCC GCAGCTGGAG ACCACCGTGC GCTCCGCCGT 
    GCAGGCGGCG CTCCAGCAGG AGATCGCCCT CGCCGCCGGC CTCCTCCGCA 
    TCTTCTTCCA CGACTGCTTC CCCCAGGGCT GCGACGCGTC GCTGCTTCTG 
    ACGGGAGCCA ACAGCGAGCA GCAGCTGCCG CCCAACCTGA CTCTGCAACC 
    ACGGGCGCTG CAGCTCATCG AGGACATCCG CGCCCAGGTG CACGCCGCAT 
    GCGGCCCCAC CGTCTCCTGC GCCGACATCA CCGCCCTCGC CACCCGCGAC 
    GCCATCGTCG CCTCCGGTGG TCTGCCCTAC GACGTGCCGC TAGGCCGCCT 
    CGACAGCTTC GCGCCGGCTC CCAGCGACGC CGTCTTCCAG CTCCCGCAGC 
    CCACCTCCGA CGTCTCCACG CTGCTCAGCG CCTTCCAGAC CCGCAACCTC 
    GACAACGTCG ACCTCGTCGC GCTCTCCGGC GGCCACTCCA TCGGCAGGGC 
    GCGATGCAGC TCCTTCTCCA ACCGCTTCCG CGAGGACGAC GACTTCGCCA 
    GGAGGCTCGC CGCCAACTGC TCTAACGACG GCAGCCGCCT GCAGGAGCTT 
    GATGTCACCA CCCCGGACGT GTTCGACAAC AAGTACTACA GCAACCTGGT 
    GGCCGGTCAG GGGGTGTTCA CCTCCGACCA GGGGCTCACC GGCGACTGGC 
    GCACCAGCTG GGTGGTCAAT GGCTTCGCCG GCAACCACTG GTGGTTCTAC 
    GGCCAGTTCG GCAGCTCCAT GGTGAAGCTG GGACAGCTCC AGGGTCCTTC 
    AGGGAACGTC GGCGAGATCC GCCGCAACAG CTGCTTCGTG CCCAACAGCC 
    AGATCATCCT TGCGGCCGCC GGCGACGATG GCTTCACGGC ATCTGCTTGA 
    CATCATCACG TCAAAAGTCT TGTGTTGTAC AAGACTCGAT CTTGTTCTTG 
    ATCTGAGCAC TAGCTAGCCG TCTCGTGCGT GCATGATAAT ACTGCGTACG 
    TACTTTGTAG TGCAGTGCGT CCCACGTACG TGACGTATAG TTTAATAAGA 
    GTATCTTTAA TCTGTTGAAG ATGCCTTGGC TCGTCGTCAA TCCTTTGAGG 
    TACGATCGAG AGATGTTTGA GAATTATAAT ACTCAATCCG TTTCCAAATA 
    TTTGATACCG TTT

    Gene models with high sequence identity

    1. AT1G71695.1 [+] show detail - Peroxidase superfamily protein
      E-value: 9e-61; Score: 231.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Haem peroxidase, plant/fungal/bacterial 5.7e-63
    superfamily Haem peroxidase 3.5e-89
    FPrintScan Plant peroxidase 1.3e-47
    FPrintScan Plant peroxidase 1.3e-47
    FPrintScan Plant peroxidase 1.3e-47
    FPrintScan Plant peroxidase 1.3e-47
    FPrintScan Plant peroxidase 1.3e-47
    FPrintScan Plant peroxidase 1.3e-47
    FPrintScan Plant peroxidase 1.3e-47
    FPrintScan Plant peroxidase 1.3e-47
    FPrintScan Plant peroxidase 1.3e-47
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2e-29
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2e-29
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2e-29
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2e-29
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2e-29
    PatternScan Peroxidases heam-ligand binding site 0
    PatternScan Peroxidase, active site 0
    ProfileScan Haem peroxidase, plant/fungal/bacterial 60.373
    Gene3D no description 2.5e-47

    See the detailed result >

    AT1G71695.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Computational Description
    Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: cell wall, vacuole, membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G18150.1); Has 4523 Blast hits to 4498 proteins in 279 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 207; Plants - 4264; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR