K28743

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28743

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28743

Determination of introduced cDNA(s)

  • J023098E10 - Rice Full-length cDNAs - Original: J023098E10

    full reading [+] show sequence

    Nucleotide sequence: J023098E10 - full reading 
    GGTGGGCTGG GCCGAATAGA CGATTGAACA ACAGGCCGAA GAAACCAAAA 
    ATGGTGTAGC CTGAAGGTGA AGCTGTCAAG CACCCAAATG GCGGCGCCGG 
    TGAGGTCGGT CCTCCCCGTC GTCCTCCTCG GCTGCGGCGG CGTCGGCCGC 
    CACCTTCTCC GCCACATCGT CTCCTGCCGC CCGCTCCACG CCAACCAGGG 
    CGTCGCCATC CGGGTGCTCG GCGTCGCCGA CAGCTCCTCT CTGCTCGTCG 
    CCGACGACCT CCACTCCAAC GGCTTCGACG ACGCGCTCCT CGCTGATCTC 
    TGCGCCGCCA AGTCCGCCGG CTCGCCCCTA TCTTCCCTGC TCGCTCGAGG 
    GCAATGTCAG CTATTCAACA ACACTGAGGC TAGGAGGAAA GTCATTGACA 
    CTGCCAGCGT TCTAGGGAAA ACAACTGGTC TTGTACTAGT TGATTGTTCT 
    GCAACTTATG ATACTGTTGG CATGCTAAAG GATGCCGTGG ATTGTGGATG 
    TTGTGTTGTA TTGGCAAACA AGAAACCGCT TACTTGTGCT TATGAGGATT 
    TCGAAAAGTT GGTCTCCAAC TTCCGTCGCA TAAGATTTGA ATCTACTGTT 
    GGAGCCAGTC TGCCTGTAAT AGCTTCTGTG ACTCGTATTA TTGCCTCTGG 
    AGATCCAGTT TCTCGTATTG TTGGCAGTCT GAGTGGTACA CTTGGTTATG 
    TGATGAGTGA GCTGGAGGAT GGAAAGAAGT TTAGTGAAGT TGTGAAAACT 
    GCCAAGTCTC TTGGCTATAC AGAACCAGAT CCACGTGATG ATCTCAGTGG 
    GATGGACGTA GCTAGAAAGG CATTGATCTT AGCTAGGCTT CTGGGGCAAC 
    AGATTAGCAT GGAGAATATT AATGTTGAGA GTTTATACCC CAGTGAATTA 
    GGACCTGATG CAATGTCCAC AAAGGACTTC CTTGAAAGTG GTTTAGTACA 
    GCTTGATAAA AGCATTGAAG AAAGAGTAAA GGCAGCATCT TTGAAAGGAA 
    ATGTTCTTCG CTATGTCTGT AAGATTGAAA GCACAGGGTG CCAAGTGGGC 
    CTTGAAGAAC TCCCGAAAAA CTCTGCACTG GGAAGGTTGA GAGGAAGTGA 
    CAATGTGGTG GAGATATACA GCAGATGCTA CGAGAGCGCC CCTCTGGTGA 
    TTCAGGGCGC TGGAGCTGGC AATGATACCA CTGCAGCTGG AGTTCTTGCT 
    GACATACTTG ATCTCCAGGA TCTCTTCCAC AAAACGGCTT GAAATCTATG 
    TCTTGTAGGT CGAACCGCAG AGTTGATTGT GAGTCGTGAC TTGTGGGGTT 
    CTTTTGGTCA CAGTATTACC TAAATAAATC TTGAGCAGAC ATATCCATTT 
    TTGTACTGTA CGCAGAAGGT TTTTGAACAA ATTTGGAAGT TGGAACC

    Gene models with high sequence identity

    1. AT5G21060.1 [+] show detail - Glyceraldehyde-3-phosphate dehydrogenase-like family protein
      E-value: 6e-115; Score: 411.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Homoserine dehydrogenase, conserved site 0
    superfamily Glyceraldehyde-3-phosphate dehydrogenase-like 2.4e-44
    superfamily NAD(P)-binding domain 2.4e-21
    HMMPanther ASPARTATE KINASE 2.5e-122
    HMMPanther ASPARTATE KINASE 2.5e-122
    Gene3D no description 1.6e-40
    HMMPfam Homoserine dehydrogenase, catalytic 2.8e-53

    See the detailed result >

    AT5G21060.1

    Model type
    Protein coding
    Short Description
    Glyceraldehyde-3-phosphate dehydrogenase-like family protein
    Computational Description
    Glyceraldehyde-3-phosphate dehydrogenase-like family protein; FUNCTIONS IN: homoserine dehydrogenase activity; INVOLVED IN: cellular amino acid biosynthetic process, aspartate family amino acid biosynthetic process, cellular amino acid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homoserine dehydrogenase, short (InterPro:IPR022697), Homoserine dehydrogenase, catalytic (InterPro:IPR001342), Homoserine dehydrogenase, conserved site (InterPro:IPR019811); BEST Arabidopsis thaliana protein match is: aspartate kinase-homoserine dehydrogenase i (TAIR:AT1G31230.1); Has 7499 Blast hits to 7499 proteins in 2310 species: Archae - 181; Bacteria - 5347; Metazoa - 3; Fungi - 160; Plants - 133; Viruses - 0; Other Eukaryotes - 1675 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR