K28806

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28806

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28806

Determination of introduced cDNA(s)

  • J033124J10 - Rice Full-length cDNAs - Original: J033124J10

    full reading [+] show sequence

    Nucleotide sequence: J033124J10 - full reading 
    GGCTCTACAT CCTTTTCATC TCCCACCTCC TCACTCCTCG TCAGTTCGTC 
    ACTTGCTTCC AAGAACCCCG TGACAAGGCG GGAAGGAATC CGAATCGCAG 
    CGAGATGATT TGCCGCAGTC TCCTCCTTCT CAGATCTAAT GCGGCCTCCA 
    AGGCAAGCAA CATAGTAAAA CATGTAGCTG CCACTGGATG TTTGCCAAAA 
    TATTCCTCAG AGGCACCAGC CAGATATTTC AGCTCTGAAC CGTCTCTTCA 
    GGTCGACTCG ACAGAAGAAA ATGGGTTCAA GGGGCATGGC ATGCTGGCCC 
    CATTCACTGC TGGATGGCAG AGCACCGATT TGCATCCTCT GGTTATTGAC 
    AGATCTGAGG GTTCTTACGT TTATGATATC AATGGGAAGA AGTACATAGA 
    TGCTCTTGCA GGATTGTGGT CTACGGCATT GGGTGGTAAT GAGCCTCGAT 
    TGATCAAAGC TGCAACTGAT CAATTGAACA AATTACCCTT CTACCACTCC 
    TTTTGGAACC GTACTACCAA ACCCTCATTG GATCTTGCTA ATGAAATTCT 
    CAGCATGTTC ACTGCAAGGG AAATGGGAAA AATATTCTTT ACAAATAGTG 
    GTTCAGAAGC AAATGATTCT CAGGTAAAGC TAGTTTGGTA TTATAACAAT 
    GCATTGGGAA GACCTAACAA GAAGAAATTT ATCGCACGCT CAAAATCATA 
    TCATGGATCA ACATTAGTGT CAGCCAGTCT ATCAGGTCTT CCTGCTCTTC 
    ACCAAAAGTT TGATCTGCCA GCTCCTTTTG TTCTGCACAC AGATTGCCCT 
    CACTACTGGC GCTTCCATCT TCCTGATGAG ACAGAAGAAG AATTTGCAAC 
    TAGACTTGCC ACCAACCTGG AGAATCTTAT TCTCAAAGAA GGACCAGAAA 
    CAATTGCTGC TTTCATTGCT GAACCTGTGA TGGGTGCTGG CGGTGTTATC 
    CATCCTCCAA AGACATACTT TGAGAAGATT CAAGCAGTCC TCAAGAAGTA 
    TGACATCTTA TTAATAGCAG ATGAGGTCAT TACAGCATTT GGTAGATTGG 
    GAACCATGTT TGGATGTGAT ATGTATGACA TTAAACCAGA TCTTGTCTCA 
    ATAGCCAAGG CTCTATCTTC TGCCTACATG CCAATTGGAG CTATTCTTGT 
    TAGTCCGGAA ATAACAGATG TAATTTATTC ACAGAACAAC AAGCTCGGTT 
    CTTTTGCTCA TGGATTTACA TACTCGGGGC ATCCAGTTTC CTGTGCTGTC 
    GCCATAGAAG CATTGAAGAT TTATAAAGAA AGGAATATCA TCGAACATGT 
    TCAGAAAATT GCCCCAAGGT TCCAGGAGGG AATCAAGGCC TTCTCTGGAA 
    GTCCAATTGT AGGCGAGATA CGTGGTTTAG GACTGATACT TGGGACTGAA 
    TTTGTCGACA ACAAGTCTCC GAATGATCCA TTCCCTGCTG AATGGGGTGT 
    TGGTTCATTG TTTGGTGCCG AGTGTGAGAA GCGCGGAATG CTTATCAGGG 
    TTGCTGGGGA TAACATTATG CTTTCGCCAC CGCTTATAAT GACTCCTGAT 
    GAAGTTGAAG AAATTATTTG CAAATATGGT GATGCCCTGA AGGCCACAGA 
    GGAAAGGATT GCAGAGCTCA AAGCCAAGAG GGGTTAGCCA TTGCCACTGC 
    CGCTGTCGTT GTTGTAGTGA TTGATGATGG TGATGACAAA TTGACAATGT 
    TCAATGTATA CAGAGTGGTT TCATCTGTAG ATGCCAATAA TGAACTGTAA 
    GCCTGAAGCT TGTTCTAGAT GCGAACATTG AAAATGATAC AATTGTTATC 
    TTCAACTGAA TATTGGAATG GGGAATATGG CAATTGCTTC TCTCAATC

    Gene models with high sequence identity

    1. AT3G22200.2 [+] show detail - Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
      E-value: 0; Score: 755.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Pyridoxal phosphate-dependent transferase, major domain 1.3e-120
    HMMPfam Aminotransferase class-III 9.9e-88
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 1.2e-76
    PatternScan Aminotransferase class-III 0
    HMMPanther AMINOTRANSFERASE 6.4e-217
    HMMPanther Aminotransferase class-III 6.4e-217

    See the detailed result >

    AT3G22200.2

    Model type
    Protein coding
    Short Description
    Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
    Curator Summary
    Genetically redundant with POP3;mediates pollen tube guidance. Double mutants are self sterile; gamma-aminobutyrate transaminase subunit precursor; nuclear gene for mitochondrial product. Encodes gamma-aminobutyrate transaminase that uses pyruvate instead of alpha-ketoglutarate as cosubstrate. Mutations in POP2/HER1 render roots resistant to the inhibitory growth effects of the volatile organic compound E-2-hexenal implicated in plant defense.
    Computational Description
    POLLEN-PISTIL INCOMPATIBILITY 2 (POP2); CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase class-III (InterPro:IPR005814), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: HOPW1-1-interacting 1 (TAIR:AT1G80600.1).
    Link
    InterPro Scan - TAIR