K28808

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28808

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28808

Determination of introduced cDNA(s)

  • J033091C16 - Rice Full-length cDNAs - Original: J033091C16

    full reading [+] show sequence

    Nucleotide sequence: J033091C16 - full reading 
    GATGGGGGTG TGCAAGAATC TACCTCCCCT CCCCAAATCT CGCTCCCACG 
    CCTCTTCCTT CCGACTTGTG ACAGAATGGC GCTCAATGAG GAGTACACAT 
    ACGTGGAGCT GGAGAAGGAG CCTTACTGGC CATTTGAGAA GCTGCGGATC 
    TCGATTACGG GAGCTGGCGG GTTCATCGCA TCCCACATCG CGAGGCGCCT 
    CAAGAGCGAG GGCCACTACA TCATTGCTTC TGACTGGAAG AAAAATGAGC 
    ACATGACTGA GGATATGTTC TGCCATGAGT TCCATCTTGT TGATTTGAGG 
    GTGATGGACA ACTGCCTCAA GGTGACCACC GGGGTTGACC ATGTTTTCAA 
    CCTTGCCGCT GATATGGGAG GGATGGGATT CATTCAATCC AATCACTCTG 
    TTATCATGTA CAACAACACC ATGATCAGCT TTAACATGCT TGAGGCCGCT 
    AGGATTAATG GTGTCAAAAG GTTCTTTTAT GCTTCAAGTG CTTGTATCTA 
    CCCTGAATTT AAGCAGCTGG ACACTGTAGT TAGCTTGAAG TAGTCAGATG 
    CTTGGCCTGC AGAGCCTCAA GATGCCTATG GCTTGGAAAA ACTTGCTACT 
    GAGGAACTGT GCAAGCATTA CACAAAGGAT TTTGGCATTG AATGTCGGGT 
    TGGCCGCTTT CATAATATCT ATGGTCCCTT TGGAACATGG AAGGGTGGAA 
    GGGAGAAGGC GCCTGCTGCT TTCTGCAGAA AAGCTCTAAC CTCCACTGAC 
    CGTTTTGAGA TGTGGGGAGA TGGTCTTCAG ACTAGATCCT TCACGTTTAT 
    TGATGAATGT GTGGAGGGTG TCCTCAGGTT GACAAAGTCC GATTTCCGTG 
    AGCCTGTAAA CATTGGAAGT GATGAAATGG TCAGCATGAA TGAGATGGCT 
    GAGATAGTCC TCAGCTTTGA GAACAAGCAG CTGCCCATCC ACCACATCCC 
    CGGGCCAGAG GGTGTCCGTG GTCGCAACTC CGACAACACG CTCATCAAAG 
    AGAAGCTTGG CTGGGCTCCA ACCATGAGGC TGAAGGATGG TCTGAGGATC 
    ACATACTTCT GGATCAAGGA GCAGCTCGAG AAGGAGAAGG CCGAGGGCGT 
    CGACTTGTCG GCCTACGGGT CATCCAAGGT AGTGCAGACT CAGGCGCCGG 
    TGCAGCTTGG CTCCCTCCGT GCTGCTGATG GAAAGGAGTG AGCTCTCACC 
    CTGGGCAGGA AACAGGCATC ATCATGATAT AGTGCTACTG GTTTCAGAAT 
    TTTTCAGATG CCATATGATG GTTGCCAGCC ACCACCATCT ATACAATTTC 
    TTGATTCTGT TTTGGACTTC ACTTCCTGAA AGATCAAAGT TTACTAGTCT 
    GCAATTTTCA CTTCTTTGTG TTGTAAACGA GGGTAAACCG CTTTTATATA 
    TATACAAGAG GGTGATAATG GTATAGCATT ACAGGGGGGA AAAACTTCAC 
    AAGAACAATG GAATTAAGAA TGAATTCAAG ATATATGTGG CCTGAGCTGT 
    GTTAAGCATT CTTAGGCTGT GTTTAGTTGG TGG

    Gene models with high sequence identity

    1. AT5G28840.2 [+] show detail - GDP-D-mannose 3',5'-epimerase
      E-value: 0; Score: 693.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily NAD(P)-binding domain 5.2e-27
    superfamily NAD(P)-binding domain 6.6e-33
    HMMPfam NAD-dependent epimerase/dehydratase 4.3e-22
    HMMPfam NAD-dependent epimerase/dehydratase 2.8e-17
    HMMPanther DTDP-GLUCOSE 4-6-DEHYDRATASE 4.8e-44
    HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 4.8e-44
    HMMPanther DTDP-GLUCOSE 4-6-DEHYDRATASE 1.8e-77
    HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 1.8e-77
    Gene3D NAD(P)-binding domain 1.4e-26
    Gene3D NAD(P)-binding domain 2.8e-13

    See the detailed result >

    AT5G28840.2

    Model type
    Protein coding
    Short Description
    GDP-D-mannose 3',5'-epimerase
    Curator Summary
    Encodes a protein with GDP-D-mannose 3',5'-epimerase activity. The enzyme is involved in ascorbate biosynthesis. It catalyzes the conversion of GDP-D-mannose to GDP-L-galactose.
    Computational Description
    "GDP-D-mannose 3',5'-epimerase" (GME); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G62830.2).
    Link
    InterPro Scan - TAIR