K28808

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28808

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28808

Determination of introduced cDNA(s)

J033091C16 - Rice Full-length cDNAs - Original: J033091C16

full reading [+] show sequence

GATGGGGGTG TGCAAGAATC TACCTCCCCT CCCCAAATCT CGCTCCCACG 
CCTCTTCCTT CCGACTTGTG ACAGAATGGC GCTCAATGAG GAGTACACAT 
ACGTGGAGCT GGAGAAGGAG CCTTACTGGC CATTTGAGAA GCTGCGGATC 
TCGATTACGG GAGCTGGCGG GTTCATCGCA TCCCACATCG CGAGGCGCCT 
CAAGAGCGAG GGCCACTACA TCATTGCTTC TGACTGGAAG AAAAATGAGC 
ACATGACTGA GGATATGTTC TGCCATGAGT TCCATCTTGT TGATTTGAGG 
GTGATGGACA ACTGCCTCAA GGTGACCACC GGGGTTGACC ATGTTTTCAA 
CCTTGCCGCT GATATGGGAG GGATGGGATT CATTCAATCC AATCACTCTG 
TTATCATGTA CAACAACACC ATGATCAGCT TTAACATGCT TGAGGCCGCT 
AGGATTAATG GTGTCAAAAG GTTCTTTTAT GCTTCAAGTG CTTGTATCTA 
CCCTGAATTT AAGCAGCTGG ACACTGTAGT TAGCTTGAAG TAGTCAGATG 
CTTGGCCTGC AGAGCCTCAA GATGCCTATG GCTTGGAAAA ACTTGCTACT 
GAGGAACTGT GCAAGCATTA CACAAAGGAT TTTGGCATTG AATGTCGGGT 
TGGCCGCTTT CATAATATCT ATGGTCCCTT TGGAACATGG AAGGGTGGAA 
GGGAGAAGGC GCCTGCTGCT TTCTGCAGAA AAGCTCTAAC CTCCACTGAC 
CGTTTTGAGA TGTGGGGAGA TGGTCTTCAG ACTAGATCCT TCACGTTTAT 
TGATGAATGT GTGGAGGGTG TCCTCAGGTT GACAAAGTCC GATTTCCGTG 
AGCCTGTAAA CATTGGAAGT GATGAAATGG TCAGCATGAA TGAGATGGCT 
GAGATAGTCC TCAGCTTTGA GAACAAGCAG CTGCCCATCC ACCACATCCC 
CGGGCCAGAG GGTGTCCGTG GTCGCAACTC CGACAACACG CTCATCAAAG 
AGAAGCTTGG CTGGGCTCCA ACCATGAGGC TGAAGGATGG TCTGAGGATC 
ACATACTTCT GGATCAAGGA GCAGCTCGAG AAGGAGAAGG CCGAGGGCGT 
CGACTTGTCG GCCTACGGGT CATCCAAGGT AGTGCAGACT CAGGCGCCGG 
TGCAGCTTGG CTCCCTCCGT GCTGCTGATG GAAAGGAGTG AGCTCTCACC 
CTGGGCAGGA AACAGGCATC ATCATGATAT AGTGCTACTG GTTTCAGAAT 
TTTTCAGATG CCATATGATG GTTGCCAGCC ACCACCATCT ATACAATTTC 
TTGATTCTGT TTTGGACTTC ACTTCCTGAA AGATCAAAGT TTACTAGTCT 
GCAATTTTCA CTTCTTTGTG TTGTAAACGA GGGTAAACCG CTTTTATATA 
TATACAAGAG GGTGATAATG GTATAGCATT ACAGGGGGGA AAAACTTCAC 
AAGAACAATG GAATTAAGAA TGAATTCAAG ATATATGTGG CCTGAGCTGT 
GTTAAGCATT CTTAGGCTGT GTTTAGTTGG TGG

Gene models with high sequence identity

AT5G28840.2 [+] show detail - GDP-D-mannose 3',5'-epimerase
E-value: 0; Score: 693.00

InterPro Scan Digest

Program	Description	E-value
superfamily	NAD(P)-binding domain	5.2e-27
superfamily	NAD(P)-binding domain	6.6e-33
HMMPfam	NAD-dependent epimerase/dehydratase	4.3e-22
HMMPfam	NAD-dependent epimerase/dehydratase	2.8e-17
HMMPanther	DTDP-GLUCOSE 4-6-DEHYDRATASE	4.8e-44
HMMPanther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	4.8e-44
HMMPanther	DTDP-GLUCOSE 4-6-DEHYDRATASE	1.8e-77
HMMPanther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	1.8e-77
Gene3D	NAD(P)-binding domain	1.4e-26
Gene3D	NAD(P)-binding domain	0.00000000000028

See the detailed result >

AT5G28840.2

Model type: Protein coding
Short Description: GDP-D-mannose 3',5'-epimerase
Curator Summary: Encodes a protein with GDP-D-mannose 3',5'-epimerase activity. The enzyme is involved in ascorbate biosynthesis. It catalyzes the conversion of GDP-D-mannose to GDP-L-galactose.
Computational Description: "GDP-D-mannose 3',5'-epimerase" (GME); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G62830.2).
Link: InterPro Scan - TAIR