K28810

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28810

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28810

Determination of introduced cDNA(s)

  • J023099D13 - Rice Full-length cDNAs - Original: J023099D13

    full reading [+] show sequence

    Nucleotide sequence: J023099D13 - full reading 
    GGGACACACA GACGCACTCA CACATTCAGC TTAAGCGAGC GAGCGAGTGA 
    ACGAGAGAGA GAGACAGAGA TGGCGAGTGT TGCCTCCTTC CCGGTGATCA 
    ACATGGAGAA CCTGGAGACC GAGGAGAGGG GCGCAGCAAT GGAGGTCATC 
    CGCGACGCCT GCGAGAACTG GGGCTTCTTC GAGATGCTGA ACCATGGCAT 
    CGCGCACGAG CTGATGGACG AGGTGGAGCG GGTGAGCAAG GCGCACTACG 
    CCAACTGCCG GGAGGAGAAG TTCAAGGAGT TCGCGCGGCG GATGCTGGAG 
    GCCGGCGAGA AGGGCGCCGA CGTGAAGGGC ATCGACTGGG AGAGCACCTT 
    CTTCGTCCGC CACCGCCCCG TCTCCAACCT CGCCGACCTC CCCGACGTCG 
    ACGACCACTA CAGGCAGGTG ATGAAGCAAT TTGCGTCGGA GATCGAGAAG 
    CTCTCGGAGA GGGTGCTGGA CCTGCTGTGC GAGAATCTGG GCCTGGAGAA 
    GGGTTACCTG AAGAAGGCCT TCGCCGGGTC GAACGGCCCA ACGTTCGGCA 
    CCAAGGTGAG CAGCTACCCG CCGTGCCCGC GCCCCGATCT CGTCGACGGC 
    CTCCGCGCCC ACACCGACGC CGGTGGCATC ATCCTGCTGT TCCAGGACGA 
    CCAGGTGAGC GGCCTCCAGC TGCTCAAGGA CGGGGAGTGG GTGGACGTGC 
    CGCCCATGCG CCACGCCATC GTCGCCAACA TCGGCGACCA GCTGGAGGTG 
    ATCACCAACG GCAGGTACAA GAGCGTCATG CACCGCGTCC TCACGCGCCC 
    CGACGGCAAC CGCATGTCCA TCGCCTCCTT CTACAACCCC GGCGCCGACG 
    CCGTCATCTT CCCGGCGCCC GCGCTCGCCG CCGCCGACGC GGCGGCGGCC 
    GCCTACCCGA GGTTCGTGTT CGAGGACTAC ATGAACCTGT ACGTGCGCCA 
    CAAGTTCGAG GCCAAGGAGC CACGCTTCGA GGCCATGAAG TCCGCCGCCG 
    AGGTCGTCCA CGCGGCGCCC ATCGCCACCG CTTGATAAGG ATCAGACTTC 
    ACTAGCTACG GCTGCGCGTG CCATGATCCA GATATATGGG ATGTGTACGG 
    TAGTGTACGT GGTGCTGTAC ATGCCGTCCC GTGTTTTTCT GCGTAATGTT 
    TTTACGTACT AGACTACTAC TAGTGTGTGT ACGTAACCTG GGGATGTAAG 
    TATCGCGTCA AGTACTCAAG TGTGTGTAAC GGGCGCTCTA ATCGTATTGT 
    TCTGTGCTTC AATGGCTACC ACGTTAGATG GGCCTTGTGC TAATGTTGTT 
    TTATGCTACT TCCGCTGTCG CCTTAGATGG GCCTTGTTGT ATAATGTCTC 
    GTCGACACAT CTGTGCTTTT CTGGGTGTGT TTAGTTGGGG AAAATGAAAT 
    TCTTGGCTGT C

    Gene models with high sequence identity

    1. AT1G05010.1 [+] show detail - ethylene-forming enzyme
      E-value: 1e-115; Score: 414.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Oxoglutarate/iron-dependent oxygenase 3.8e-23
    Gene3D no description 1.6e-89
    HMMPanther 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE 4.2e-211
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 4.2e-211
    superfamily Clavaminate synthase-like 5.3e-91
    Coil coiled-coil 0

    See the detailed result >

    AT1G05010.1

    Model type
    Protein coding
    Short Description
    ethylene-forming enzyme
    Curator Summary
    Encodes 1-aminocyclopropane-1-carboxylate oxidase
    Computational Description
    ethylene-forming enzyme (EFE); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate oxidase activity; INVOLVED IN: response to fungus, ethylene biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G12010.1); Has 8587 Blast hits to 8552 proteins in 1009 species: Archae - 0; Bacteria - 1142; Metazoa - 103; Fungi - 1035; Plants - 4924; Viruses - 0; Other Eukaryotes - 1383 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR