K28816

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28816

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28816

Determination of introduced cDNA(s)

  • J023069K23 - Rice Full-length cDNAs - Original: J023069K23

    full reading [+] show sequence

    Nucleotide sequence: J023069K23 - full reading 
    ACTACACCAC TCACGCCTCC TCCCCTCTCT CTCAGTCCAC CCCTCCCCAT 
    TTCCACCACT CCGCCCTCGC CGCCGACCGC CGCCGCCGCC GCCTTCGCCG 
    TCGTCTCGCA GCGCGACCCA CGGCCACGCG GGGGGGACGC GCTCGTCGTC 
    TCTCTCTCTG TCCTCTTGTG GTTCCCGCCG ACGCACGAGC AGGAGCTAGG 
    GTTTCCGGCG CCGGGGCGCC GGGGGTTATG AGCAGCAGCC GCCGCCCCGC 
    AGGATCTAGG GTTCCGACGA CTCCGCTCAC GGATGGAGGG TGGTAGAGGC 
    GCGGGCGACC TCCACTCGGC AAACACCCAT GGATTATGAT GATTCTGATT 
    TTCAGAGCCA GAATTTCCAG TTAGCTGGTG AAGACAACAA TAAATTCCCA 
    GCAGGTCTGC GGCAATTTCC ACTGCCCAAA CTTGACATCG ACGACCAACT 
    ACAAAGCCAC CTCAGATTTG ATAACCTAAT TGATTCAGAG GGACTTTTTA 
    GCGGACAAGG TCACGGCAAC AGTTGGATTG AGGTTTTGTC CACTGGAAGT 
    AGTGTTGTTG ATTTTAGTTC TAGTGCTGCT GAATCTTGCT CTATAAATAG 
    GACAAATAAT GTATGGTCTG AGGCAACATC CACTGAATCT GTGGAAATGT 
    TATTGAAGTC AGTGGGTGAA AATGAGATGA CCGGTAACAT GGATGAGAAC 
    GCACATCATC AGATTAGTGG AATGGACAGT AAAACTGATC CATCCAACAT 
    GCCGTCCAAA ACAAGTGATT CTCCCACAGG CAACATTATA GTACCAGCTG 
    AGAATGATAA GTCTCAGAGC ACTCGTTCGG AAATGGCAGA AGATCCTTCA 
    AGGATTCAGC CTCAGCTTGA GCATATCAGA CCTTTCTCAG TGGATGACAA 
    AGCTGAACAA GCAGTAGGTT CAACTTTATC AGACAGAAAA TCTAACTATA 
    CGCTGGAATC TGTTTCTGAG AGGTGCATAG TGAGTGGGAG GTCTTCTTCT 
    CCAAAGAAAA CATCAGAAAG CTGTCCAGAT GTTGGCAGCT ATTTTGAGGT 
    GGTCCATGAT GACGATTCTT TGGACAACCT CAACATACAG TCAGATGGAG 
    TAGGTTCTAG AAAGTTGAAT AATGAACCCT TCTCAGACTT GGCACCATTA 
    CAGAACATTT ATACTACCAG CTCATATCAC TTTGAGCAGG ACAATCAAGA 
    ATCAGGAGTT GGTGTTACCA CTCAAGGTTC AGAAATATGC CACACGAATG 
    AAAATAAAGA TGGACTTCAT GATTTGCAAA ATTTGTCATG TACAAGCCAG 
    CATTTGGGTT CTTCAAACTT AACTAGTGAA GTTAGCAATG AAACTTTATT 
    GTCGGGAAGT TCTGATGGAT TACTGGAGGC CATCACAAAT CCAGTAAAGA 
    TGCTGCACAG GAGTGATGAC ACTAGTAAGA GAGCCAGTGC TACACTGCAA 
    TCATCTTTCT TACAAGTCGA GCATGCATCA GAAGGCACAA AAGGTTCTAT 
    TGACAGGAGC AGTGAGCCCG CCATGAAGAA ATTTGGTGCT AGTGAAGAAC 
    CCAATTCTGC TAAATCTCAA GGTGAGCCAG ATTTGAAAAA TTCTAGTCCT 
    CATCTTGTCA TTCCTTTGCC AACCATAAGT GGTGAGTTTA TTCAGTCTCC 
    AAAAGGAAAA CAGCTTGCTC ATGTTGCTGG AGTTTCTGAA GAAACC

    Gene models with high sequence identity

    1. AT4G17330.1 [+] show detail - G2484-1 protein
      E-value: 7e-31; Score: 132.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G17330.1

    Model type
    Protein coding
    Short Description
    G2484-1 protein
    Curator Summary
    gene of unknown function expressed in seedlings, flower buds and stems
    Computational Description
    G2484-1 protein (G2484-1); FUNCTIONS IN: RNA binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Agenet (InterPro:IPR008395), Tudor-like, plant (InterPro:IPR014002); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT1G68580.2); Has 6169 Blast hits to 4010 proteins in 631 species: Archae - 30; Bacteria - 1624; Metazoa - 1931; Fungi - 976; Plants - 400; Viruses - 26; Other Eukaryotes - 1182 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR