K28819

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28819

Determination of introduced cDNA(s)

J023017D04 - Rice Full-length cDNAs - Original: J023017D04

full reading [+] show sequence

GGCACTCTTG GCATGCGCGA GCGCGACCCC TCCCCCTCGA ACCGCCGCGA 
CCTTCTCGAT GCTTCCCAAA TCCTCCTCCT CGTGAACTCG TCGCCTTCGT 
CTTCGTCTCG ATCTCCATGG CGGACTCGAG CGCGGCCCGC CCCACCGTCC 
TCGTCACCGG CGCCGGCGGC CGCACAGGAA ACATTGTCTA CAACAAGCTC 
AAGGAAAGGT CTGACCAGTT TGTTGTGAGA GGTTTAGTGA GAACAGAGGA 
AAGCAAACAA AAGATTGGTG GAGGCAATGA TGTTTACATT GCCGACATAA 
GGGACAGAGA TCATCTTGTG CCTGCTGTTC AAGGTGTCGA TGCGCTCATA 
ATCCTCACGA GTGCTGTGCC AAAGATGAAA CCTGGTTTTG ACCCTAGCAA 
AGGTGGGAGG CCTGAGTTTT ACTATGAAGA TGGAATGTAT CCTGAGCAGG 
TGGATTGGAT TGGCCAAAAG AATCAGATTG ACACTGCCAA AGCTGCTGGA 
GTGAAGCATA TCGTGCTTGT GGGATCCATG GGAGGAACAA ATCCTAACCA 
TCCACTGAAC AGCCTAGGCA ATGGCAATAT ACTGGTTTGG AAGCGCAAGT 
CAGAACAGTA TTTGGCAGAC AGTGGAGTCC CTTATACAAT AATAAGGCCT 
GGTGGTCTGC AAGACAAAGA CGGGGGAGTG AGGGAGTTGA TTGTTGGCAA 
TGACGATGAA CTTCTCCAGA CAGACACGAA GTCAATTCCA AGAGCTGATG 
TTGCTGAAGT TTGTGTTCAG GCCCTGCAGT ATGAAGAGAC AAAGTTCAAG 
GCATTTGATT TGGCTTCAAA GCCTGAAGGC ACAGGCACAC CAACAAAAGA 
CTTCAAATCG TTGTTCTCCC AGGTTACAGC CCGATTTTGA GCCATCTTGA 
GGAGCAATCT CATCTCGGTT TCCTTGTGTA TTGGATATTT GGATGTATAT 
CTTCGTGGTT AGTGAGGTGT GAAGTTGTAG TTTGCTGTAA TTCGTCATCG 
TTTCCTGAAA ACTCCTATTG AAATCAGTGA ATTGTTCAGA CAAGACACAA 
ATTGATATTA TTCAAGGACA TGATGTCTTT TTAAAATG

Gene models with high sequence identity

AT2G37660.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
E-value: 6e-118; Score: 421.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	UNCHARACTERIZED	8.7e-10
HMMPanther	NITROGEN METABOLIC REGULATION PROTEIN NMR-REL	8.7e-10
Gene3D	NAD(P)-binding domain	3.7e-64
HMMPfam	3-beta hydroxysteroid dehydrogenase/isomerase	1.8e-07
superfamily	NAD(P)-binding domain	1.1e-28

See the detailed result >

AT2G37660.1

Model type: Protein coding
Short Description: NAD(P)-binding Rossmann-fold superfamily protein
Computational Description: NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: copper ion binding; INVOLVED IN: defense response to bacterium; LOCATED IN: thylakoid, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 3-beta hydroxysteroid dehydrogenase/isomerase (InterPro:IPR002225), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G02240.1); Has 2691 Blast hits to 2647 proteins in 745 species: Archae - 56; Bacteria - 1822; Metazoa - 3; Fungi - 41; Plants - 459; Viruses - 0; Other Eukaryotes - 310 (source: NCBI BLink).
Link: InterPro Scan - TAIR