K28828

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	epinastic (PATO:0000945) (Cauline leaf::Shape::epinastic)
	rosette leaf (PO:0000014)	abnormal (PATO:0000460) (Rosette leaf::Others)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997) (Seed::Number::few)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28828

Determination of introduced cDNA(s)

J013001K06 - Rice Full-length cDNAs - Original: J013001K06

full reading [+] show sequence

GATACAAGCT TTCTTCTTCT TCTTCTTCTT TTTTCCATCA TGTGATAGTA 
GTGATACTAT GCAAAGACAT GATGAAGAAA TTGCTACAAG CTGGTTCTTA 
ACATTGTGTT TCTTCTAAAT CTTCCAAGTA TTTGATATTT CTGCAATTGA 
CTCCTTAATG TTCAAACTAA ACTAGTAGGT CGTTCTTTTT TGTTTGTTAG 
ACTACTTCAG TAATTATTAT TTTTGACTCA GCCTTGCACT TTTGAACATT 
TCTTGCATGT GCACTTGTCT ATATGCAAAT ACCTGTGATT CTTAACCCAG 
ATCCTGACAT CCATTTTGTC CCATCTCCTT CCTTTTGGAT GCAGATGATT 
TGAAACCACA TGATGTTGGA ATTGAGCCGA GTATGTCGTG TTTCAAGAAT 
GCCGATTCTA AAGGGCCTCC TCGGGTGACT TATCTACATT TTTACGATTG 
CCCCAAGTTT TCGTTTGGTA TCTTCTGTTT ACCGAAGTCA GCTGTCATTC 
CCCTCCACAA TCATCCTGGG ATGACAGTAT TCTGCAAGAT ACTGTTTGGC 
TCCATGCACC TCAAGTCCTA TGACTGGGCT AAAAGTGCCC CAGATAATGA 
TAATAATGCA CTTGAGACCT CAGATGGAGC TCGTTTAGCA AAGGTAAATA 
CAGATGCGGT TTTTGATGCT TCATCGGAGA CCACAGTTCT ATACCCTGAA 
AATGGAGGGA ATTTGCACTG TTTTACTGCA AGGACAGCTT GTGCTGTGCT 
TGACGTGATG GGACCCCCGT ACAACCGCGC GGATGGAAGG GATTGCTCAT 
ATTACGACGA ATCCCCATAC TTGAGTTCAT CTGGTGGAGA TGCACGGTAC 
TCGTGGCTCA AAGAAAATCA TAGTACGTTC GAGATGAAAG GTGTACAGAT 
GCCACAAAGG TTTATCGTTT AGAAATGACA TACAGCATCA TTTTGTGGCA 
ACACCTGCAA CCATTTCCGC CGAAGAATGG TCCTCCTCTA GCTTGCTGTA 
GATACCTGTA ACTGCAAAGA CAGGCAGATG GTACAAGGGA AGATGTGGCC 
ACTAAGCTCA GACTAGCAAA CTCTTGAGTG ACACAGACGT TACATTTGTT 
TGGCTTCTTA TTTTGGTCAG GGTTGAAACA ATCTCTTGTG ATTTTCAGAT 
AACTCTGTTC CTCATATGTT ATCCTCGTCT GGCAGTGCAA AATTGGGATT 
GGGTGATACA GTGAACAAGT GTTTTGTTTT TGGGCCATGA TCATCTTTTT 
TTGTTTCCCT GTAGAACTGT ATGCAGGCGT TTTTTGAAAG TGATCATGTA 
CCGAATTCAG AGTGTGGTTT GCTTGGTTTG TTGAACAGGG AAGCTATTCC 
TTTTTGCCTC TTACTGTAGT AGACAAGAGG CATATACATA CATAACATAG 
CCTTTGTTTC TTG

Gene models with high sequence identity

AT5G39890.1 [+] show detail - Protein of unknown function (DUF1637)
E-value: 4e-51; Score: 199.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Protein of unknown function DUF1637	7.3e-65
HMMPanther	Protein of unknown function DUF1637	3.3e-51

See the detailed result >

AT5G39890.1

Model type: Protein coding
Short Description: Protein of unknown function (DUF1637)
Computational Description: Protein of unknown function (DUF1637); FUNCTIONS IN: cysteamine dioxygenase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1637 (InterPro:IPR012864); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1637) (TAIR:AT5G15120.1); Has 361 Blast hits to 361 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 102; Fungi - 0; Plants - 224; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
Link: InterPro Scan - TAIR