K28832

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28832

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28832

Determination of introduced cDNA(s)

  • J023141O10 - Rice Full-length cDNAs - Original: J023141O10

    full reading [+] show sequence

    Nucleotide sequence: J023141O10 - full reading
    GCATTGCTGC GCCGTGCTCG AACAGATCTC GATCTCGATC TCGATCTCCG 
    CACGCACCAA GGCGAAGCCA ATTCCACTAC CACCGCTCTT CCTTCTTCTC
    ACTCCTTCTC GCGACTGCGG CGAGGGTGAG TCTCCTGTCG TGAGAATTTC
    GGTCTACCGG CGGCGGCGGC GGCGTTGGGT GTTCTTCGCG TCGTCAGACG
    TCGGGATCTG AATTACTAGA CTTCCAATAA GAAGGAAACA CCTTAGGGAA
    TGCAGAAAGA TGTGCTTGCA TGCTAGAGAG CTACCTTGTG AGGGAATTGG
    CAGGGTAGCA AGCCATATTT CTCCTTCCAC AACTCTTCAT GACATTGGAA
    CACAAGAGTA TATACAGCGC TTGCTCCATG TGCTCTCGCA CTATGGGGTT
    CGACGTGGCA ACTCAACCAT CTTCTTAGAT CACCATCTTG GTGGAGACGG
    TTGAAGTCAC CTATCATTTC TAGGCTCCTG GTTACCACAC TTTGAGCTTT
    GGGATTACTG CTTTCTTTGG CGTGATGGCG GAGCAGAGAG GAAATATGTT
    GATGAAAAAG TATGAGATGG GGAAATTACT CGGGCAAGGA ACCTTTGCCA
    AGGTTTACCA TGCCCGTAAC ACCGAGACTT CTGAGAGTGT TGCTATCAAG
    ATGATTGATA AAGAGAAGGT TTTGAAAGGC GGGCTCATGG ATCAGATCAA
    ACGTGAGATT TCTGTGATGA AGTTGGTGAG GCATCCAAAC ATTGTGCAGT
    TATATGAGGT CATGGCTACC AAGACTAAGA TATATTTTGT GCTGGAGCAC
    GTCAAAGGTG GAGAGTTGTT CAACAAAGTT CAGAGAGGAA GACTAAAGGA
    AGATGCAGCA AGGAAGTACT TCCAACAACT GATTTGCGCT GTTGACTTTT
    GCCACAGCAG GGGTGTTTAT CACCGTGATT TGAAGCCAGA AAATCTTCTT
    CTTGATGAGA ACAGCAATCT GAAGGTTTCA GATTTTGGCC TAAGTGCTCT
    TGCTGATTGC AAAAGACAGG ATGGGCTGCT CCACACAACC TGTGGCACAC
    CTGCTTATGT TGCTCCAGAA GTGATCAACA GAAGAGGCTA TGACGGTGCT
    AAGGCTGACA TATGGTCTTG TGGAGTGATA CTCTTTGTGC TATTGGCCGG
    CTATCTACCT TTCCATGATA AGAACTTGAT GGATATGTAT AAGAAGATTG
    GGAAAGCAGA ATTCAAATGT CCAAGTTGGT TTAATACCGA TGTTCGAAGG
    CTCTTGCTCA GGATACTTGA TCCTAACCCA AGTACAAGGA TCTCAATGGA
    CAAAATCATG GAAAATCCTT GGTTTAGGAA GGGTCTCGAT GCAAAGCTGC
    TCAGATATAA TCTACAACCA AAGGATGCAA TTCCTGTTGA TATGAGCACA
    GATTTTGACT CCTTCAATAG CGCTCCAACA TTGGAGAAGA AGCCGTCCAA
    CTTGAATGCT TTTGATATAA TTTCTTTGTC AACTGGACTT GACCTCTCTG
    GTATGTTTGA GGAGTCTGAT AAGAAAGAGT CCAAATTCAC ATCCACCAGT
    ACAGCTTCAA CAATCATATC TAAGATTGAG GATATTGCCA AGGGCTTGCG
    GTTGAAGCTC ACAAAGAAAG ATGGTGGACT GTTGAAGATG GAAGGCTCCA
    AGCCTGGAAG GAAAGGTGTT ATGGGCATTG ATGCAGAGAT ATTCGAGGTT
    ACCCCAAACT TTCATCTTGT GGAGCTAAAG AAGACAAATG GTGATACACT
    TGAATACCGT AAGGTCTTGA ACCAAGAGAT GAGACCAGCT TTGAAGGACA
    TAGTCTGGGC TTGGCAGGGT GAGCAACCGA AGCAGCAGCA GCAGCCAACG
    TGCTAAAAAA CTTTGACAAG GGCAAGTTTT TTGCAATTTG AGTCGACTTC
    CAATCGTTTA TGTATTTCTG CAGCTTTTGT TCCTCTTGTT ATTCATTTTC
    ATTCCTCATG TATTGTTAAT ATTAATATCG ATGCTATCTT CAAATGAGGA
    TTTATTTGAA AAAAATGTTG AGTTTGTTTC TGGATGTTAC TGTTTTTGCT
    CATGGAGAAC TGTAATACTG ACATTTTTCA TTTATCATGA CGCAAAAAGA
    TGCATATT

    Gene models with high sequence identity

    1. AT5G58380.1 [+] show detail - SOS3-interacting protein 1
      E-value: 6e-155; Score: 545.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein kinase-like domain 7.7e-93
    ProfileScan Protein kinase, catalytic domain 52.442
    ProfileScan NAF/FISL domain 14.184
    HMMPfam Serine/threonine-protein kinase-like domain 1.2e-74
    HMMPfam NAF domain 8.1e-24
    HMMPanther CBL-interacting protein kinase 4e-232
    HMMPanther Calcium/calmodulin-dependent protein kinase-like 4e-232
    HMMSmart Serine/threonine-protein kinase domain 3.7e-107
    HMMSmart Tyrosine-protein kinase, catalytic domain 5.1e-14
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    Gene3D no description 4.1e-65

    See the detailed result >

    AT5G58380.1

    Model type
    Protein coding
    Short Description
    SOS3-interacting protein 1
    Curator Summary
    Encodes a CBL-interacting protein kinase with similarity to SOS protein kinase.
    Computational Description
    SOS3-interacting protein 1 (SIP1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 2 (TAIR:AT5G07070.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR