K28832

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28832

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28832

Determination of introduced cDNA(s)

  • J023141O10 - Rice Full-length cDNAs - Original: J023141O10

    full reading [+] show sequence

    Nucleotide sequence: J023141O10 - full reading 
    GCATTGCTGC GCCGTGCTCG AACAGATCTC GATCTCGATC TCGATCTCCG 
    CACGCACCAA GGCGAAGCCA ATTCCACTAC CACCGCTCTT CCTTCTTCTC 
    ACTCCTTCTC GCGACTGCGG CGAGGGTGAG TCTCCTGTCG TGAGAATTTC 
    GGTCTACCGG CGGCGGCGGC GGCGTTGGGT GTTCTTCGCG TCGTCAGACG 
    TCGGGATCTG AATTACTAGA CTTCCAATAA GAAGGAAACA CCTTAGGGAA 
    TGCAGAAAGA TGTGCTTGCA TGCTAGAGAG CTACCTTGTG AGGGAATTGG 
    CAGGGTAGCA AGCCATATTT CTCCTTCCAC AACTCTTCAT GACATTGGAA 
    CACAAGAGTA TATACAGCGC TTGCTCCATG TGCTCTCGCA CTATGGGGTT 
    CGACGTGGCA ACTCAACCAT CTTCTTAGAT CACCATCTTG GTGGAGACGG 
    TTGAAGTCAC CTATCATTTC TAGGCTCCTG GTTACCACAC TTTGAGCTTT 
    GGGATTACTG CTTTCTTTGG CGTGATGGCG GAGCAGAGAG GAAATATGTT 
    GATGAAAAAG TATGAGATGG GGAAATTACT CGGGCAAGGA ACCTTTGCCA 
    AGGTTTACCA TGCCCGTAAC ACCGAGACTT CTGAGAGTGT TGCTATCAAG 
    ATGATTGATA AAGAGAAGGT TTTGAAAGGC GGGCTCATGG ATCAGATCAA 
    ACGTGAGATT TCTGTGATGA AGTTGGTGAG GCATCCAAAC ATTGTGCAGT 
    TATATGAGGT CATGGCTACC AAGACTAAGA TATATTTTGT GCTGGAGCAC 
    GTCAAAGGTG GAGAGTTGTT CAACAAAGTT CAGAGAGGAA GACTAAAGGA 
    AGATGCAGCA AGGAAGTACT TCCAACAACT GATTTGCGCT GTTGACTTTT 
    GCCACAGCAG GGGTGTTTAT CACCGTGATT TGAAGCCAGA AAATCTTCTT 
    CTTGATGAGA ACAGCAATCT GAAGGTTTCA GATTTTGGCC TAAGTGCTCT 
    TGCTGATTGC AAAAGACAGG ATGGGCTGCT CCACACAACC TGTGGCACAC 
    CTGCTTATGT TGCTCCAGAA GTGATCAACA GAAGAGGCTA TGACGGTGCT 
    AAGGCTGACA TATGGTCTTG TGGAGTGATA CTCTTTGTGC TATTGGCCGG 
    CTATCTACCT TTCCATGATA AGAACTTGAT GGATATGTAT AAGAAGATTG 
    GGAAAGCAGA ATTCAAATGT CCAAGTTGGT TTAATACCGA TGTTCGAAGG 
    CTCTTGCTCA GGATACTTGA TCCTAACCCA AGTACAAGGA TCTCAATGGA 
    CAAAATCATG GAAAATCCTT GGTTTAGGAA GGGTCTCGAT GCAAAGCTGC 
    TCAGATATAA TCTACAACCA AAGGATGCAA TTCCTGTTGA TATGAGCACA 
    GATTTTGACT CCTTCAATAG CGCTCCAACA TTGGAGAAGA AGCCGTCCAA 
    CTTGAATGCT TTTGATATAA TTTCTTTGTC AACTGGACTT GACCTCTCTG 
    GTATGTTTGA GGAGTCTGAT AAGAAAGAGT CCAAATTCAC ATCCACCAGT 
    ACAGCTTCAA CAATCATATC TAAGATTGAG GATATTGCCA AGGGCTTGCG 
    GTTGAAGCTC ACAAAGAAAG ATGGTGGACT GTTGAAGATG GAAGGCTCCA 
    AGCCTGGAAG GAAAGGTGTT ATGGGCATTG ATGCAGAGAT ATTCGAGGTT 
    ACCCCAAACT TTCATCTTGT GGAGCTAAAG AAGACAAATG GTGATACACT 
    TGAATACCGT AAGGTCTTGA ACCAAGAGAT GAGACCAGCT TTGAAGGACA 
    TAGTCTGGGC TTGGCAGGGT GAGCAACCGA AGCAGCAGCA GCAGCCAACG 
    TGCTAAAAAA CTTTGACAAG GGCAAGTTTT TTGCAATTTG AGTCGACTTC 
    CAATCGTTTA TGTATTTCTG CAGCTTTTGT TCCTCTTGTT ATTCATTTTC 
    ATTCCTCATG TATTGTTAAT ATTAATATCG ATGCTATCTT CAAATGAGGA 
    TTTATTTGAA AAAAATGTTG AGTTTGTTTC TGGATGTTAC TGTTTTTGCT 
    CATGGAGAAC TGTAATACTG ACATTTTTCA TTTATCATGA CGCAAAAAGA 
    TGCATATT

    Gene models with high sequence identity

    1. AT5G58380.1 [+] show detail - SOS3-interacting protein 1
      E-value: 6e-155; Score: 545.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein kinase-like domain 7.7e-93
    ProfileScan Protein kinase, catalytic domain 52.442
    ProfileScan NAF/FISL domain 14.184
    HMMPfam Serine/threonine-protein kinase-like domain 1.2e-74
    HMMPfam NAF domain 8.1e-24
    HMMPanther CBL-interacting protein kinase 4e-232
    HMMPanther Calcium/calmodulin-dependent protein kinase-like 4e-232
    HMMSmart Serine/threonine-protein kinase domain 3.7e-107
    HMMSmart Tyrosine-protein kinase, catalytic domain 0.000000000000051
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    Gene3D no description 4.1e-65

    See the detailed result >

    AT5G58380.1

    Model type
    Protein coding
    Short Description
    SOS3-interacting protein 1
    Curator Summary
    Encodes a CBL-interacting protein kinase with similarity to SOS protein kinase.
    Computational Description
    SOS3-interacting protein 1 (SIP1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 2 (TAIR:AT5G07070.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR