K28843

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28843

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28843

Determination of introduced cDNA(s)

  • J023108H12 - Rice Full-length cDNAs - Original: J023108H12

    full reading [+] show sequence

    Nucleotide sequence: J023108H12 - full reading 
    GATATCAGAT TGATCGATCG GTGATCGGTC TATGCCGTTG CTGCCGATGA 
    CGAAGCTGGA GCTCGGCCAC CGCGGCGAGG CGTGGGAGCC CGGCTGCCTC 
    CGCGCCGTCG CCGGCGAGCT CCTCTTCACC TTCCTCTTCG TCTTCATCGG 
    CGTCGCCTCC ACCATCACCG CCGGGAAGGC GGCGGGTGGG GCCGGCGAGG 
    CGGCGGCGGT GACGGCGGCG GCGATGGCGC AGGCGCTGGT GGTGGCGGTG 
    CTGGCGACGG CGGGGTTCCA CGTCTCCGGC GGCCACCTCA ACCCGGCCGT 
    GACGCTCTCC CTCGCCGTCG GCGGCCACAT CACGCTCTTC CGCTCGGCGC 
    TCTACGTCGC CGCCCAGCTC GCCGGCTCCT CCCTCGCGTG CCTCCTCCTC 
    CGGTGCCTCA CCGGCGGCGC CGCCACGCCG GTGCACGCGC TGGCCGACGG 
    GGTGGGCCCC GTCCAGGGCG TGGCGGCGGA GGCCGTGTTC ACGTTCACGC 
    TGCTGCTGGT GATCTGCGCC ACCATCCTCG ACCCGAGGAG GGCGGCGCCG 
    CCGGGGACGG GGCCGCTGCT GACGGGGCTC CTCGTCGGCG CCAACACCGT 
    CGCCGGCGGC GCGCTCACCG GCGCGTCCAT GAACCCGGCG AGGTCGTTCG 
    GGCCGGCGCT GGCCACCGGC GAGTGGGCCC ACCACTGGGT CTACTGGGTC 
    GGGCCGCTGG CAGGTGGGCC CCTCGCGGTG GTGGCCTACG AACTCCTGTT 
    CATGGACGTG GAGGACGCCG GTGGGGCCCA CCAGCCGCTG CCGCAGGAGT 
    GAAGTGAAGC CGGGGAAGGC GCGCTCACGT GAGGTCCACG TGGCTTCGGG 
    AGATTGCACG GCCGTGTGCG TGCGTTTTCG GCCGTTGATT GGTGTAATCT 
    CCAGATGGAA TTATTTTTGT ACGTTTGATT TTTTTTTCCA TTTTGTTTAA 
    AAAAAATGGG AGGCGTGCGT GTAAATTTGG GGTTTTTTTT TGTGTGTATG 
    TGCCGGTACA AGTGAGGTTT TGCTCGTTGA AAATATGATG AATAATACGT 
    ATTTC

    Gene models with high sequence identity

    1. AT2G25810.1 [+] show detail - tonoplast intrinsic protein 4;1
      E-value: 2e-55; Score: 213.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Major intrinsic protein 3.1e-56
    HMMPanther TONOPLAST INTRINSIC PROTEIN 1.9e-101
    HMMPanther Major intrinsic protein 1.9e-101
    FPrintScan Major intrinsic protein 8.9e-42
    FPrintScan Major intrinsic protein 8.9e-42
    FPrintScan Major intrinsic protein 8.9e-42
    FPrintScan Major intrinsic protein 8.9e-42
    FPrintScan Major intrinsic protein 8.9e-42
    FPrintScan Major intrinsic protein 8.9e-42
    Gene3D Major intrinsic protein 2.5e-55
    superfamily Major intrinsic protein 6.1e-57
    PatternScan Major intrinsic protein, conserved site 0

    See the detailed result >

    AT2G25810.1

    Model type
    Protein coding
    Short Description
    tonoplast intrinsic protein 4;1
    Computational Description
    tonoplast intrinsic protein 4;1 (TIP4;1); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plant-type vacuole membrane, membrane, central vacuole; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: gamma tonoplast intrinsic protein (TAIR:AT2G36830.1); Has 10430 Blast hits to 10407 proteins in 2161 species: Archae - 84; Bacteria - 4945; Metazoa - 1471; Fungi - 406; Plants - 2499; Viruses - 0; Other Eukaryotes - 1025 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR