K28846

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	increased height (PATO:0000570) (Adult plant::Plant height::tall)
	cauline leaf (PO:0000013)	decreased width (PATO:0000599) (Cauline leaf::Shape::narrow) dark green (PATO:0001249) (Cauline leaf::Color::dark)
	rosette leaf (PO:0000014)	increased size (PATO:0000586) (Rosette leaf::Shape::large)
	stem (PO:0009047)	increased thickness (PATO:0000591) (Stem::Shape::thick) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28846

Determination of introduced cDNA(s)

J023137P20 - Rice Full-length cDNAs - Original: J023137P20

full reading [+] show sequence

GACCTCGCAA ATCACAAGCA ACATCACCAC AGATCGATCG AGACAGCTAC 
TGACATCAAC GTGAAAAAGG GAAGAAGAAC TAACCATGTC CATGCAGGAG 
ATGCTCCGCA TTGGAGACGA CGACGGCCGG AGCGATGCTC TGGAACGCGA 
GCTCAAGGAG AAGCTGAGGT TGCGCGGCGA TGCCTCACCG GCGAAATGCA 
CCAGGCAGGA GCAGCGGTGG CGGTCTGATC ATGGCATCGT CGACGCCCGC 
GAGAGGTTCG TGCAGGCGTA CGGCCGCCTC AGGGACGATC TCGTCGGCGA 
CGACTCGTGC GAGCTCACCG ACGAAGCCAG GCGCTGGCTT GCTCAGATGA 
TCGACTACAA TGTACCTGGA GGAAAGTTGA ACCGAGGGCT GTCAGTGATA 
GACAGTTACC TGCTGTTGAA ACAAGGAAGT GAGGTTACTG AAGATGACTT 
CTTCCTTGCT TGTGTGCTTG GTTGGTGTGT AGAATGGTTT CAAGCATGTG 
CACTACTACT TGATGACATC ATGGACGATT CACATACCAG GAGAGATCAG 
ATTTGCTGGT ACCGGCGACC TGAGGTTGGC CTCAGGGGTA TAAACGATGG 
TATCATACTA AAATGTCACA TCTTGATAAT GATAAAAAAG TATTTCAGAG 
AAAAGCCTTA CTTTCTTGAT ATCTTAGAAA TATGGAGCGA GATAGCTCTG 
CAGACTTCTC TGGGGCAGAT GCTTGATCTT ATTAGCACAC ATACTGGAGC 
AGATGATCTT GCAAAATACA GTATTGAAGG CTACCGTCGC ATTGTTAAGT 
ACAAGACAGC GTACTACTCC TTTTACCTTC CTGTGGCCAA TGCTTTGCTC 
TTATCTGGCG CAAAACTTGA AGACTTCAGT GGTCTAAAGG ATATACTTAT 
TGAAATGGGC ATATATTTTC AGATACAGGA TGACTACTTG GACTGTTTTG 
CTGACCCTAA CACCATAGGC AAGATTGGAA CTGACATCGA AGATCATAAG 
TGTTCCTGGT TAATAGTACA GGCTCTTGGT CATGCTGACA ACAATCAAAT 
AGAAGTACTA CATAGGAACT ATGGCAAGAA GGATTCAAGT TCTGTTTCCG 
AAGTAAAGAG GACTTACGCG GCGCTTGATT TGAAAGATAT CTTCTCCGAG 
TTCGAACGTC GATGCTACAA CCACCTGGTC ACCTCTATCG AAGCTCAGAA 
GGATCATGCA GCACGGGAGA TCCTGATATC ATTTCTGAAG AAAATTCATC 
AAAGGAAGAA GTAGTTAATA AGTTATAACA ATTATGACCT GTATGAGCTT 
ATGGTAACAT TTAAAAATGA TCGAAATCTA TCTCCCCATA AGTTATAATA 
ACACTATCTC CGGTTTC

Gene models with high sequence identity

AT5G47770.1 [+] show detail - farnesyl diphosphate synthase 1
E-value: 2e-115; Score: 413.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Polyprenyl synthetase	3.9e-67
HMMPanther	FARNESYL-PYROPHOSPHATE SYNTHETASE	1.1e-136
superfamily	Terpenoid synthase	2.8e-93
PatternScan	Polyprenyl synthetase	0
Gene3D	Terpenoid synthase	5.5e-94

See the detailed result >

AT5G47770.1

Model type: Protein coding
Short Description: farnesyl diphosphate synthase 1
Curator Summary: Encodes a protein with farnesyl diphosphate synthase activity.
Computational Description: farnesyl diphosphate synthase 1 (FPS1); FUNCTIONS IN: dimethylallyltranstransferase activity, geranyltranstransferase activity; INVOLVED IN: farnesyl diphosphate biosynthetic process, isoprenoid biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: farnesyl diphosphate synthase 2 (TAIR:AT4G17190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR