K28908

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28908

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28908

Determination of introduced cDNA(s)

  • J033069K07 - Rice Full-length cDNAs - Original: J033069K07

    full reading [+] show sequence

    Nucleotide sequence: J033069K07 - full reading 
    GACGAATTCC CAATAAAGAA ATAGGCAAAA TTCCCCATCT CCTCGTCTCC 
    TCCCAACTCC AAACCCTAGC TCCCACCCCC TCTCGCCGTC GCCGTCGCGT 
    CCCATGGCGA AGTCGCGGCC GCCCAAGCGG ATCCTCGAGT CCTACACCAT 
    CAAGGGCTCC GACAAAGTCA TCAAGCCTGG GGACTGTGTG CTAATGAGGG 
    CATCTGATAC ATCAAAGCCA CCCTATGTGG CAAGAGTTGA GGCTATTGAG 
    GCTGCAGGGT CACGAGGCAC AAATGTGAGA GTACGGGTGC GGTGGTACTA 
    TCGGCCAGAG GAGTCCATGG GTGGAAGGCG TCCATTTCAT GGTGCCAAAG 
    AGGTGTTCCT CTCGGATCAC TATGACGTAC AGAGTGCTGA CACCATAGAG 
    GGAAAGTGCA ACGTTCACAG CTTCCGTAGC TACACAAAGC TTGATTCTGT 
    CAATGCTGAG GACTTCTTCT GTCGCTTTGA GTACAAATCA GCCACAGGAA 
    GCTTCGTGCC CGACCGCATT GCTGTGTTCT GCAAGTGTGA GATGCCATAC 
    AATCCTGATG ACCTTATGAT CCAATGTGAG GAATGCTCTG ATTGGTTTCA 
    CCCTTCTTGT ATTGGAATGA CTATTAAAGA TGCAAAAAAA CTAGAGCATT 
    TTTTCTGCCA GAGCTGTACT GCGGAAAATG GAAAGATGGC TGAGGATTCT 
    CATGAAGCTA CAGCGCAATC CGAAGAAAAG CAGGTGGAGT CAAAAAGACG 
    GAGAAGGTGA CTGCCCCCCA GATTCATTGA CGAGATACAC CTGGATGTAC 
    AAAGCCTTCT CAAGTTGGTG TAATGCTATT TATTTGTCAT GGCAAGTGTG 
    TGTGACCCAC GACCACGAGA GTCCCTTCCT GTAATGTCAG TCGCATGGTG 
    TACATAAACT TTTCGACCTG AGACTGTTGT ATTAGGAGAC GACACGACCT 
    GTTGTTGTTG CATGATGTTT TTAGCAGCGT CAGAATTAGC ATGGTAGAGT 
    CGGGTGATGA AGCCCCTCGC GGGCATTAGG ACTCCCGTAT GGATGTTATC 
    ACTGATCATA CATTGATACT ACATTGGATG CAGTTGAGTC TGTCATCTGC 
    GTTTGTCTTT GGAGAATTCT TGTACCATCA ATCCATCATG TGAACTTTGA 
    TTCT

    Gene models with high sequence identity

    1. AT4G22140.2 [+] show detail - PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein
      E-value: 6e-84; Score: 308.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Zinc finger, PHD-type, conserved site 0
    HMMSmart Bromo adjacent homology (BAH) domain 4.8e-38
    HMMSmart Zinc finger, PHD-type 6.7e-09
    ProfileScan Zinc finger, PHD-finger 9.241
    ProfileScan Bromo adjacent homology (BAH) domain 23.212
    HMMPanther PHD FINGER TRANSCRIPTION FACTOR 7.1e-31
    Gene3D no description 4.8e-16
    superfamily Zinc finger, FYVE/PHD-type 8.6e-12
    HMMPfam Bromo adjacent homology (BAH) domain 7.8e-24
    HMMPfam Zinc finger, PHD-finger 9.2e-11

    See the detailed result >

    AT4G22140.2

    Model type
    Protein coding
    Short Description
    PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein
    Computational Description
    EARLY BOLTING IN SHORT DAYS (EBS); FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: positive regulation of flower development, regulation of transcription, DNA-dependent, seed germination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: Bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT4G04260.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR