K28914

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28914

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28914

Determination of introduced cDNA(s)

  • J033092M18 - Rice Full-length cDNAs - Original: J033092M18

    full reading [+] show sequence

    Nucleotide sequence: J033092M18 - full reading 
    GTCTTTCTCT CTCTAGGGTT TTTCCCCACT TTCGTTGCTT CGCTTCGCTT 
    CTTCCCCCAC CTGCTCTCGT CTCCATCACC ATCCCTTCTC TCTCCTCTCT 
    CTCTCTCCAG TCTCCACCTC CGAGGAGAGG CCAATGGCGG ACGCCGACGC 
    GAGGGCCCCG CCCAAATCGG ACCCCGGCGC CACGCCGATC GGTTCGATCT 
    CCCCTTCCTC CGCCGCCCCC GCCGCCGGGG AGGACGAGGT GGAGGTCGAG 
    GTGGAGGTGG AGGAGCAGCT CGCCGGACTC GCCATCGCCG ATCAGGGGGA 
    GGAGCTGCTG CTTCCCAAGC CCACCGGCTG GGAGGATGGC CCTGTTGTTG 
    TTGCTGGAGA TGAGGTCTCC GGTGGTGAGA AGCTGCCGGG TGAGGTGGCG 
    GCGGCGGTGG GGGTGGAGGG TGCTGCGGCG GATTCGAGGC CGCGGTTCCC 
    GAGGCGACCC GGGGAGCCGG ACTGCACCTA CTACGTCAAG TTCGGGAGCT 
    GCCGCTTTGG GATGAAGTGC AAGTTCAATC ATCCGAGGAA GAAGAAGAGT 
    AGGGTGAAAG GTAGTAACGG TGGTAGTGGC AGCGGCGGGA GCAACAGCAG 
    CAGTAACAAA GCCTCCTCGC CTGATGATGT GCAGCAGGCT CCAAAAGAGG 
    AATACGGAAG CTATGTTCCA GATATTTCAC CTGAAGTTGA TTCTTTGGGA 
    TTTGCTGACA AGGGGAGTGC GTCTAACTTA GAAAACTTTA AGAAATATTC 
    TTATGAGATT ATCGATGTGA AGAAGGGAAG AGTGGAGCCA AAGGAACTTA 
    AGGTTGCCAA AGAGAAAAGG AAGGAATTTA TTTCAGAAGG TAGTTCCCAG 
    GAGGAATGCA AGTATTATTC AACACCTGGA GGATGCAAAT TTGGTAAAGC 
    TTGTAAATAC CTCCACCGTG ATGGAAAAGA AGGGAAAACA GACGCTGAAA 
    AGGTTGACCT GAACTTTCTC GGTCTTCCAC TTCGTCCAGG GGAAAAGGAG 
    TGTCCCTACT ACATGCGTAC TGGGAGCTGC AAGTACGCCA CTAACTGCAA 
    GTTTCACCAT CCTGATCCTT CTAATGTTGC TTCTAAAGAT CCACAGTTGG 
    AGCATGAGAA TGGGGATGCT CCACAGCAAG ATGTTCAAGG ATCATCGTCT 
    CAGCCAAATG CTTCAATTTG GCCCGATCAG AGAACAGTGA ATGAGCATCA 
    TGTTCCGTTT ATAGCTCCAT CTCCATCGTA CAGTGCAGGG ATGCTTCCTC 
    CTCAAGGAAT GTATCCACCT CCTGAATGGA ATGGGTATCA TCAGGTTCCG 
    TTGAATCCAT ATTATCCTCC TGGAGTCCCT TTCCAACATT TTCCAGCTGC 
    TCCTATAAAT CATCCTATGT ACAAGGCACC AGAAATACCT GGACATCAGC 
    AGGTTCCTTC CGAGGAATAC CCAGAGAGAC CTGGCCAACC TGAATGTCAG 
    CATTTTGTGA AGAGTGGTTT TTGCAAATTT AGGATGAAGT GCAAATATCA 
    CCACCCAAGG TCACCGGTGC CTCCAGCAGG AGCTCTTAGC CCTCTTGGCT 
    TGCCTATAAA ACCTGATCAG CCTGTGTGCA CATACTATGG TCGCTATGGG 
    GTCTGCAAAT TTGGGCCAGC TTGCGCATAC AATCACCCCT TCAATTTTAG 
    CCCTGTACCT GCAGCGGGAC CTCCTCTCCT CCCTGCTCAA TACCCAACTC 
    CAGGAAACTA CACTCTCTGA AGCAGGCACG AGCGATTTTT CATCGTCGCC 
    GTGATGCTTG TAATAACTTC ACTTGTAAGA TAGCGTAGCT GGAAGCTGTA 
    CGTGGGTTCA CTCACTGACA GTGGGAGAGA TCTGGCTTGG AAAGTGGCAA 
    CGAAGTTGCA TCAAGCTGGG TACATTGCCG CTGGAATTCA TGAAATTAAA 
    CAAAACCTGT CAAAACTCTT TACATTGTAC AGCATCGTCG CGTTTAGTAT 
    ACAACTATGG CGTCGGGCTG AATCCCATAT TGCAGTTTTA CATCTTCCAT 
    G

    Gene models with high sequence identity

    1. AT5G63260.1 [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
      E-value: 1e-56; Score: 218.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Zinc finger, CCCH-type 2.8e-06
    HMMPfam Zinc finger, CCCH-type 5.4e-06
    HMMPfam Zinc finger, CCCH-type 5.4e-09
    HMMPfam Zinc finger, CCCH-type 3.3e-05
    ProfileScan Zinc finger, CCCH-type 14.418
    ProfileScan Zinc finger, CCCH-type 13.103
    ProfileScan Zinc finger, CCCH-type 14.793
    ProfileScan Zinc finger, CCCH-type 13.676
    ProfileScan Zinc finger, CCCH-type 13.732
    superfamily CCCH zinc finger 1.2e-05
    superfamily CCCH zinc finger 5.2e-05
    superfamily CCCH zinc finger 0.0001
    superfamily CCCH zinc finger 0.00017
    superfamily CCCH zinc finger 0.0003
    HMMPanther PROLINE RICH POLYPEPTIDE 3 0.00037
    HMMPanther PROTEIN PHOSPHATASE RELATED 0.00037
    HMMSmart Zinc finger, CCCH-type 0.0011
    HMMSmart Zinc finger, CCCH-type 0.00053
    HMMSmart Zinc finger, CCCH-type 1e-05
    HMMSmart Zinc finger, CCCH-type 0.028
    HMMSmart Zinc finger, CCCH-type 0.0081

    See the detailed result >

    AT5G63260.1

    Model type
    Protein coding
    Short Description
    Zinc finger C-x8-C-x5-C-x3-H type family protein
    Computational Description
    Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT3G48440.1); Has 2144 Blast hits to 1341 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 542; Fungi - 351; Plants - 1021; Viruses - 0; Other Eukaryotes - 230 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR