K28922

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28922

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28922

Determination of introduced cDNA(s)

  • J023078E16 - Rice Full-length cDNAs - Original: J023078E16

    full reading [+] show sequence

    Nucleotide sequence: J023078E16 - full reading 
    GACTCCTCAG TCCTCGCCTC GGCTCGGCTC CCTCCCACGC TCCAGCTCCG 
    CCTCCAATGG CGCCTATGGC CATCTCCACC CCGCTCGCCC TCCGCGCCTC 
    CCCGACCCGC CTCCTCTCCC GCAGGCGGAG CGGAGCCAAA TCAGGCGTGG 
    CTCTCCCAGG TCCACAATTT GTACCACCTG GTATTTCTTC AAAGTTGGAC 
    GAGAGGATAC ATTGTCATTC TTCTCTGAGG AAAAATACAA TTGTAGCATC 
    AGAGAATGAA AATCCACCTT TAATGCCTGC CATAATGACT CCTGCTGGTG 
    CTCTTGATCT GGCAACTGTA TTGTTGGGGA ACCGCATTAT CTTCATTGGT 
    CAATATATTA ACTCGCAAGT AGCACAGCGT GTAATATCAC AGCTTGTCAC 
    ACTTGCTGCT GTTGATGAAG AGGCTGATAT TCTGATCTAC CTGAACTGCC 
    CCGGCGGAAG TCTCTACTCC ATCTTAGCAA TTTATGATTG CATGTCCTGG 
    ATCAAGCCCA AAGTTGGAAC AGTGTGCTTT GGTGTTGTTG CTAGCCAGGC 
    AGCAATTATA CTTGCTGGCG GTGAGAAGGG AATGCGTTAT GCCATGCCAA 
    ATGCTAGAGT AATGATTCAT CAACCTCAAG GTGTATCAGA GGGTAATGTG 
    GAGGAGGTGA GGCGACAGGT TGGGGAAACC ATTTATGCTC GTGATAAAGT 
    TGATAAGATG TTTGCTGCTT TTACTGGGCA AACCTTGGAT ATGGTACAAC 
    AGTGGACAGA GAGGGATCGT TTCATGTCTT CATCTGAAGC CATGGACTTT 
    GGACTAGTTG ATGCCCTGCT GGAAACAAGA TACTAACAAA CAAACACTTA 
    GGCACAGTTT GATTAGCAGA GGCTGGTACA AGGATTGTGA AACTGGAGCT 
    GAAGTTGAGA TTTTCGCCGT CCTTCTAGTT CAAGGACTCC AATGACAGGA 
    GGCTGGATCT GCGAGACTTG AATGCATCGC CATCGCTCCT ATGAGCAAAA 
    CATCTCTGCG TTGAGTGTGA TTTTTTGCTC TTCTTTTTTG GATCTGGTTT 
    TACATGCCGC CAGCCTATGG TCTCAATGCA TTGGTCCTGC TAATGTTTAG 
    TGTAGACCAG ATGATCCTTT AGACAGCAAA ACATCAGTTA TTACTCCGTA 
    GATTTTCCCA TGAGCTGATT CCAGACTGTG TGCAACTTTT GTGTTCCAAT 
    TGCAAAGTTT GCAACCCAAC CCAACCCAAC ACATGGGCTG ATGGGCTGTT 
    GACAAAGGAG AGATTTTACA CTTCACATAT GTCAAACT

    Gene models with high sequence identity

    1. AT1G11750.1 [+] show detail - CLP protease proteolytic subunit 6
      E-value: 8e-82; Score: 301.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Peptidase S14, ClpP 7.6e-39
    FPrintScan Peptidase S14, ClpP 7.6e-39
    FPrintScan Peptidase S14, ClpP 7.6e-39
    FPrintScan Peptidase S14, ClpP 7.6e-39
    FPrintScan Peptidase S14, ClpP 7.6e-39
    HAMAP CLPP_MF_00444 31.789
    superfamily ClpP/crotonase 7.6e-44
    HMMPfam Peptidase S14, ClpP 1.1e-59
    PatternScan Peptidase S14, ClpP, active site 0
    Gene3D no description 2.5e-56
    HMMPanther Peptidase S14, ClpP 2.3e-62

    See the detailed result >

    AT1G11750.1

    Model type
    Protein coding
    Short Description
    CLP protease proteolytic subunit 6
    Curator Summary
    One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
    Computational Description
    CLP protease proteolytic subunit 6 (CLPP6); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization, photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: nuclear encoded CLP protease 5 (TAIR:AT1G02560.1); Has 13333 Blast hits to 13329 proteins in 3010 species: Archae - 2; Bacteria - 8425; Metazoa - 145; Fungi - 82; Plants - 1079; Viruses - 86; Other Eukaryotes - 3514 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR