K28924

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28924

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28924

Determination of introduced cDNA(s)

  • J033050B05 - Rice Full-length cDNAs - Original: J033050B05

    full reading [+] show sequence

    Nucleotide sequence: J033050B05 - full reading 
    GGTCGTCGTC GTCGTCGTCT CCTCGATCGG GTTACCACGG CTGCGGGCTA 
    CGGCGACTAG CTTCCTTCTC TCGCCGAAGC GAGACCTCGC CTCCCCCGAG 
    GAACCTGTGT GCAATAATTT GTTGTTACCT CTGGCATCCA TAAGATGGAG 
    GTCCTGAGTT GGAGAACGGT GTGCCTCTTG GTTCTCTGCA CCGTGGCGTT 
    GCTGCGCCCG GCTGCGGCTA TCCGCTTTGT GATTGACAGG GAAGAGTGTT 
    TCTCGCATAA CGTGGAGTAT GAGGGGGATA CTGTTCATGT ATCGTTCGTG 
    GTGATCAAGG CTGACACCCC ATGGCATTAT AGCGAGGACG GAGTGGATCT 
    TGTGGTTAAG GATCCTAATG GTGCTCAAGT CCGTGATTCT CGTGACAAGA 
    CTAGTGATAA GTTTGAGTTC ATAGTTCAGA AGAGAGGCGT ACATCGCTTC 
    TGCTTCACCA ATAAATCCCC ATACCATGAA ACTGTAGATT TTGATGTGCA 
    TGTTGGCCAT TTTTCGTACT TTGATCAGCA TGCGAAAGAT GAACATTTTG 
    CTCCTTTGTT TGAACAAATA GCAAAATTAG ATGAAGCGCT TTACAACATT 
    CAGTTCGAGC AGCACTGGCT AGAGGCCCAA ACTGACCGAC AAGCTATATT 
    GAACGAAAAC ATGAGCAGGA GGGCTGTCCA CAAGGCTCTA TTGGAGTCAG 
    CAGCGCTGAT TGCAGCTAGC GTCATTCAAG TCTATCTATT GCGCCGCCTC 
    TTTGAGCGCA AGTTGGGGAC ATCCAGGGTC TAAATACTCC AAAAGTAGCA 
    GCTCCTCCTA ATTTACACTC TCGTCATCCC AACTAAAGCT GTAGTTCCGA 
    ACTGTATTGG TTGCTAGATC TGCTGTTTAC ATGCTGTGGG TTGCTGTCAC 
    ATAGACCTTT AATTATTATG ATTCCATTAG ATGTTTTCCT TGAAACC

    Gene models with high sequence identity

    1. AT3G07680.1 [+] show detail - emp24/gp25L/p24 family/GOLD family protein
      E-value: 4e-80; Score: 295.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam emp24/gp25L/p24 2.5e-31
    ProfileScan GOLD 15.206
    HMMPanther COATED VESICLE MEMBRANE PROTEIN 5.9e-102
    HMMPanther COPII-COATED VESICLE MEMBRANE PROTEIN 5.9e-102

    See the detailed result >

    AT3G07680.1

    Model type
    Protein coding
    Short Description
    emp24/gp25L/p24 family/GOLD family protein
    Computational Description
    emp24/gp25L/p24 family/GOLD family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family/GOLD family protein (TAIR:AT3G22845.1); Has 859 Blast hits to 859 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 431; Fungi - 210; Plants - 147; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR