K28933

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28933

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28933

Determination of introduced cDNA(s)

  • J013092A05 - Rice Full-length cDNAs - Original: J013092A05

    full reading [+] show sequence

    Nucleotide sequence: J013092A05 - full reading
    GCCCATCGCA TCCGCATCTC GGCATCTCGC GTCGCGACCC GCGACCCGCG 
    GCGGCGCGTC CCGAATGGCG GCCGATCGCC CGCTCGCGAG GGTTGATGAG
    ATAGCAAGGC GCCATTTCCA AATATTTCGA TCCGCAGCGT AATCTCTCTC
    GCGTGCGCCG GTGCGCGATC CCCTCCCTCC CTCCTCCTCA ATCCCCCAGA
    TCGCGTGCGC CGCGGGCTCT CCCCGCGTTG ACTCTCCAGC ATCTAGATCC
    GCGCCTGCGC TCCCGACGAG GTCGGCCGGT CTACGGTCAC CCTCGTGGTT
    TCCATTGACT TGTTTTTCTC TTCTTTTTCT TTTTTTCCCC TCTTCTCCCC
    AACCTCGCAA CAAAATCGGC GGCTATCCTC GTGTTTCTTC TTCGCTCCGT
    GGCCGCAGAA TCCCCCCACC GCTGTTCTTG CGGCGCCGGT GTTCGTTTGA
    AAGTTGGCTG CGCTGTCCTG GGAGGCCTCA GCAGCAGCAG CAGCGAGCTT
    TGCTCTTGTG AGCGCTTCGT GTGCTTGCAG CTGCGTTTTA TTATTGCGTC
    TTGGAGCTGT CACGACGTGG TTGTTGAGAG GAATCTATCA TCCCTTCACA
    GTTGCGAGGA AAGCTTCCTG TGATGTCTAA TCTATCAGAG CCCTCAAAAG
    AAGCTGCATC AGCTGATGTT TCAAGTGCTG TCCAGAAAAC TGGAGCATGG
    AGTAACACGT TGAACATTCT TCTGCAACAA GCTTCAGTCT ATGGTGTGGC
    TGCTGGTTAT TGCCTGTCAG CATCCCTGCT CTCCATTATC AACAAATGGG
    CAGTCATGAA ATTTCCATAC CCTGGAGCAT TGACAGCTTT ACAGTACTTC
    ACTAGTGTTG TTGGAGTTCT CTTATGTGGA CAACTAAAGC TTATTGAGCA
    TGATGGCCTT AATTTGAGGA CCATGTGGAA GTTCTTGCCT GCTGCGGTGA
    TGTTCTACAT CTCCATCTTC ACAAACAGTG AACTTCTACT CCATGCCAAT
    GTGGACACTT TCATCGTGTT TCGCTCAGCT GTGCCAATTT TTGTGGCCAT
    TGGAGAGACC CTTTATCTTC ACCAACCATG GCCATCACTC AAGACATGGC
    TTTCACTTTC AACTATACTT GGTGGAAGTG TGATCTATGT TTTCACAGAC
    AACCAGTTCA CTGTGACTGC TTACACCTGG GCAGTGGCAT ATCTTGCAAG
    CATGTCCATT GACTTTGTCT ACATCAAGCA CGTTGTCATG ACCATTGGCC
    TGAACACATG GGGCCTTGTG CTTTACAACA ATCTGGAGGC TTTGATGCTC
    TTCCCTCTTG AGATGCTTCT AATGGGGGAG CTTAATCAGA TGAAGGGCGA
    CAGCGCTAAA GTGACAAACT GGCTTTCATC TGATGTCATT CTTCCTGTTG
    CTCTGTCTTG CTTGTTCGGG CTATCTATAT CCTTCTTCGG GTTCTCCTGC
    AGACGGGCTA TCTCGGCAAC TGGATTTACC GTGCTCGGTA TAGTGAACAA
    GCTCCTGACT GTTGTGATTA ATCTCCTTAT CTGGGACAAG CATGCCTCCT
    TTGTGGGAAC AATTGGGCTC TTGATCTGCA TGTCCGGTGG TGTTCTCTAC
    CAGCAATCCA CCACAAAACC AAAGGCCCCC AAGGCTGAGC CAAAAGAGGA
    GAATGATGAG GAGCAGCAGA AATTGCTGGA GATGCAGCAA GGGCTCGAAA
    GTAGCTCAAC TCAGAAGCAA GCGTCATCTT AAGCCTGGTA GGAAATTTGG
    CGTCGATATC TTACTCTCAA CCTCAAGACG GCTTCCCTGT ATCATATTAT
    GGGATGCTAA AGAAGAATCA TTTGGCCAAA GGATGTTTGT TCGTCATGCT
    AGAATCCTGT AATGCTGTTG GCATGAAAAA TCTCAGAGAA AACTTAATGT
    CACTTTAAAA TTCTTTGTTT AGTGGTATAC CGTAATTCAT TTGTTAGACC
    TGTGGTAGGG TATCAATTAT CAAAGAATCC TGAAACATAC TCGAACAGAA
    TACTCCGTAT ACAATATGCT GTTTCATTGA TAATACAGGG TGGTTACCCT
    TTTCCATGCA GTATATTTGT TTTTGCTTTT CGTTTTGTGA TGAAGGAAAA
    TTATCTTTTG TACTCAAATT GCCTGTATAT TATGTATTCT GTATTGTGTT
    GAAGGCTCG

    Gene models with high sequence identity

    1. AT1G76340.1 [+] show detail - golgi nucleotide sugar transporter 3
      E-value: 2e-133; Score: 473.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF250 1.9e-06
    HMMPanther SOLUTE CARRIER FAMILY 35 3.1e-52
    superfamily Multidrug resistance efflux transporter EmrE 0.00081
    superfamily Multidrug resistance efflux transporter EmrE 0.011

    See the detailed result >

    AT1G76340.1

    Model type
    Protein coding
    Short Description
    golgi nucleotide sugar transporter 3
    Curator Summary
    Encodes a nucleotide-sugar transporter.
    Computational Description
    golgi nucleotide sugar transporter 3 (GONST3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: golgi nucleotide sugar transporter 4 (TAIR:AT5G19980.1); Has 1377 Blast hits to 1372 proteins in 233 species: Archae - 0; Bacteria - 8; Metazoa - 324; Fungi - 246; Plants - 675; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR