K28933

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28933

Determination of introduced cDNA(s)

J013092A05 - Rice Full-length cDNAs - Original: J013092A05

full reading [+] show sequence

GCCCATCGCA TCCGCATCTC GGCATCTCGC GTCGCGACCC GCGACCCGCG 
GCGGCGCGTC CCGAATGGCG GCCGATCGCC CGCTCGCGAG GGTTGATGAG 
ATAGCAAGGC GCCATTTCCA AATATTTCGA TCCGCAGCGT AATCTCTCTC 
GCGTGCGCCG GTGCGCGATC CCCTCCCTCC CTCCTCCTCA ATCCCCCAGA 
TCGCGTGCGC CGCGGGCTCT CCCCGCGTTG ACTCTCCAGC ATCTAGATCC 
GCGCCTGCGC TCCCGACGAG GTCGGCCGGT CTACGGTCAC CCTCGTGGTT 
TCCATTGACT TGTTTTTCTC TTCTTTTTCT TTTTTTCCCC TCTTCTCCCC 
AACCTCGCAA CAAAATCGGC GGCTATCCTC GTGTTTCTTC TTCGCTCCGT 
GGCCGCAGAA TCCCCCCACC GCTGTTCTTG CGGCGCCGGT GTTCGTTTGA 
AAGTTGGCTG CGCTGTCCTG GGAGGCCTCA GCAGCAGCAG CAGCGAGCTT 
TGCTCTTGTG AGCGCTTCGT GTGCTTGCAG CTGCGTTTTA TTATTGCGTC 
TTGGAGCTGT CACGACGTGG TTGTTGAGAG GAATCTATCA TCCCTTCACA 
GTTGCGAGGA AAGCTTCCTG TGATGTCTAA TCTATCAGAG CCCTCAAAAG 
AAGCTGCATC AGCTGATGTT TCAAGTGCTG TCCAGAAAAC TGGAGCATGG 
AGTAACACGT TGAACATTCT TCTGCAACAA GCTTCAGTCT ATGGTGTGGC 
TGCTGGTTAT TGCCTGTCAG CATCCCTGCT CTCCATTATC AACAAATGGG 
CAGTCATGAA ATTTCCATAC CCTGGAGCAT TGACAGCTTT ACAGTACTTC 
ACTAGTGTTG TTGGAGTTCT CTTATGTGGA CAACTAAAGC TTATTGAGCA 
TGATGGCCTT AATTTGAGGA CCATGTGGAA GTTCTTGCCT GCTGCGGTGA 
TGTTCTACAT CTCCATCTTC ACAAACAGTG AACTTCTACT CCATGCCAAT 
GTGGACACTT TCATCGTGTT TCGCTCAGCT GTGCCAATTT TTGTGGCCAT 
TGGAGAGACC CTTTATCTTC ACCAACCATG GCCATCACTC AAGACATGGC 
TTTCACTTTC AACTATACTT GGTGGAAGTG TGATCTATGT TTTCACAGAC 
AACCAGTTCA CTGTGACTGC TTACACCTGG GCAGTGGCAT ATCTTGCAAG 
CATGTCCATT GACTTTGTCT ACATCAAGCA CGTTGTCATG ACCATTGGCC 
TGAACACATG GGGCCTTGTG CTTTACAACA ATCTGGAGGC TTTGATGCTC 
TTCCCTCTTG AGATGCTTCT AATGGGGGAG CTTAATCAGA TGAAGGGCGA 
CAGCGCTAAA GTGACAAACT GGCTTTCATC TGATGTCATT CTTCCTGTTG 
CTCTGTCTTG CTTGTTCGGG CTATCTATAT CCTTCTTCGG GTTCTCCTGC 
AGACGGGCTA TCTCGGCAAC TGGATTTACC GTGCTCGGTA TAGTGAACAA 
GCTCCTGACT GTTGTGATTA ATCTCCTTAT CTGGGACAAG CATGCCTCCT 
TTGTGGGAAC AATTGGGCTC TTGATCTGCA TGTCCGGTGG TGTTCTCTAC 
CAGCAATCCA CCACAAAACC AAAGGCCCCC AAGGCTGAGC CAAAAGAGGA 
GAATGATGAG GAGCAGCAGA AATTGCTGGA GATGCAGCAA GGGCTCGAAA 
GTAGCTCAAC TCAGAAGCAA GCGTCATCTT AAGCCTGGTA GGAAATTTGG 
CGTCGATATC TTACTCTCAA CCTCAAGACG GCTTCCCTGT ATCATATTAT 
GGGATGCTAA AGAAGAATCA TTTGGCCAAA GGATGTTTGT TCGTCATGCT 
AGAATCCTGT AATGCTGTTG GCATGAAAAA TCTCAGAGAA AACTTAATGT 
CACTTTAAAA TTCTTTGTTT AGTGGTATAC CGTAATTCAT TTGTTAGACC 
TGTGGTAGGG TATCAATTAT CAAAGAATCC TGAAACATAC TCGAACAGAA 
TACTCCGTAT ACAATATGCT GTTTCATTGA TAATACAGGG TGGTTACCCT 
TTTCCATGCA GTATATTTGT TTTTGCTTTT CGTTTTGTGA TGAAGGAAAA 
TTATCTTTTG TACTCAAATT GCCTGTATAT TATGTATTCT GTATTGTGTT 
GAAGGCTCG

Gene models with high sequence identity

AT1G76340.1 [+] show detail - golgi nucleotide sugar transporter 3
E-value: 2e-133; Score: 473.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Protein of unknown function DUF250	1.9e-06
HMMPanther	SOLUTE CARRIER FAMILY 35	3.1e-52
superfamily	Multidrug resistance efflux transporter EmrE	0.00081
superfamily	Multidrug resistance efflux transporter EmrE	0.011

See the detailed result >

AT1G76340.1

Model type: Protein coding
Short Description: golgi nucleotide sugar transporter 3
Curator Summary: Encodes a nucleotide-sugar transporter.
Computational Description: golgi nucleotide sugar transporter 3 (GONST3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: golgi nucleotide sugar transporter 4 (TAIR:AT5G19980.1); Has 1377 Blast hits to 1372 proteins in 233 species: Archae - 0; Bacteria - 8; Metazoa - 324; Fungi - 246; Plants - 675; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).
Link: InterPro Scan - TAIR