K28935

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28935

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28935

Determination of introduced cDNA(s)

J033041K18 - Rice Full-length cDNAs - Original: J033041K18

full reading [+] show sequence

GGCACGCAAA GAATCGGTAG CCGCCTTTGT TTGCTGCTCT CTGAAATCTC 
TCTGAGTTTT GTGCTTTCAC TGCACTGTTC TGGTTCTTGG ACTCCCTGTT 
CTTGGTTCCT GCATTTCTTT TCTTTTTTGC CTTTGTTTGT CCCATTTTTG 
TTGGGTTCTT GGAGGTGGTG GAGGATGGCC GGAGGAGGGG CGGCGCCGCC 
GCCGAAGCAG GAGGAGTTGC AGCCTCACCA GGTGAAGGAC CAGCTGCCCA 
GCGTGTCCTA CTGCATCACC AGCCCACCGC CATGGCCTGA GGCCGTCATA 
CTTGGATTCC AGCACTACAT TGTGATGCTG GGCACATCAG TGATTATTCC 
CAGTGCTCTT GTTCCCCAGA TGGGAGGTGG AAATGAGGAG AAGGCTCGGG 
TGATTCAGAC GCTGCTGTTC GTTGCCGGGA TAAACACCCT CTGCCAATCG 
TTCTTCGGGA CTCGTCTTCC AGCTGTGATG GGAGGATCGT ACACCATTGT 
TGCGCCGACA ATTTCCATCA TATTGGCTGG CCGCTATAGC AATGAAGCAG 
ATCCTCATGA GAAATTCTTG CGGACAATGC GAGGAACACA AGGTGCTCTC 
ATCATTGCAT CGACAATCCA GATCATACTT GGTTTCAGTG GTCTCTGGCG 
CAATGTAGTT AGACTTCTTA GTCCATTGTC TGCTGTTCCT TTGATCTCAC 
TTGCTGGATT TGGCCTCTAT GAGCTTGGTT TTCCAGGGGT TGCAAAGTGC 
GTGGAAATTG GGCTCCCAGA AATCATTCTA CTGCTTGTAT TTTCTCAGTA 
TTTACCCCAT GTCATACATG TGGCAAAGCC CGTGTTCGAC CGGTTTGCTG 
TGATTTTCAC CATTGCTATT GTGTGGCTGT ATGCATACAT TCTAACTGCT 
AGTGGCGCAT ACAAGAATGC CCGGCCGAAG ACACAAGTGC ACTGTCGTGT 
TGATCGCTCT GGAATTATCA GTGGAGCTCC ATGGATAAGA GTTCCTTTCC 
CTTTTCAATG GGGGGCTCCA ACATTTGATG CTGGTGAATC TTTTGCCATG 
ATGATGGCCT CATTTGTTGC TCTTGTAGAG TCAACTGGGA CCTTCATTGC 
TGTGTCAAGA TATGCAAGTG CGACTATGAT ACCTCCATCA GTGCTTGGTC 
GTGGAATTGG TTGGCAGGGT ATTGGTACTT TAATAGGTGC ATTTTTCGGG 
ACAGCCAATG GAACTGCTGT ATCAGTGGAA AATGCCGGTT TGCTAGCTTT 
GACACATGTT GGCAGCCGGA GAGTAGTGCA AATATCTGCT GGCTTCATGA 
TCTTCTTTTC TATCCTTGGG AAATTCGGAG CAATCTTTGC GTCAATTCCC 
TTACCAATAT TCGCTGCACT GTATTGCATC TTCTTTGCAT ATATTGGTGC 
CTGTGGTCTG AGCTTCCTTC AGTTCTGCAA TCTCAACAGC TTCAGGACCA 
AGTTCATTGT GGGGTTCTCG TTCTTCATGG GCTTATCGGT TCCTCAGTAC 
TTCAACGAGT ATACATCGGT TGCCGGTTAT GGTCCAGTGC ACACCGGCGC 
TCGATGGTTC AATGACATGA TAAATGTACC ATTCGCGTCA AAGCCGTTCG 
TCGCAGGGCT CATTGCGTAC TTCCTAGACA ACACTATCCA GAGGCGCGAC 
AATGGGGTGA GGAGAGACAG GGGATACCAC TGGTGGGACA AGTTCAGGAG 
CTTCAAGACG GACACCCGGA GCGAGGAGTT CTACTCTCTG CCGTTCAACT 
TGAACAAGTT CTTCCCTTCC GTGTGATCCG CCTTAGCTCG GGTTCGGACC 
GCAGCAGAAT TGGGGGGGAG CTTCAGCTTC TACTTGTATG GGGGCATGTT 
TTTTCGATGT TGGTTCGATG GTTTTGTAAA TCTTAGGATG GGTGAATTTT 
GGCTGGTTGG GGGACTAATC TGTCATGCCA CATATTATTG CATTTTGGTT 
CAGTACAGAG GTCAGGGAGG GGCTGCTGCT TCTGGTTGAT CTGTTGTTCT 
TGAATCTTGA GAGCTTTCTG CTAGGAGTTC CCCTTGTGGT AAGGTAGATT 
CAGGATTCTG TACTTCTGTT TTGCCCAAGG AGAATCACAG TGCTTAGTAG 
CATC

Gene models with high sequence identity

AT5G62890.3 [+] show detail - Xanthine/uracil permease family protein
E-value: 0; Score: 866.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	SODIUM-DEPENDENT VITAMIN C TRANSPORTER	9.7e-272
HMMPanther	Xanthine/uracil/vitamin C permease	9.7e-272
HMMPfam	Xanthine/uracil/vitamin C permease	4.6e-65

See the detailed result >

AT5G62890.3

Model type: Protein coding
Short Description: Xanthine/uracil permease family protein
Computational Description: Xanthine/uracil permease family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: cell wall, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: Xanthine/uracil permease family protein (TAIR:AT5G49990.1); Has 9339 Blast hits to 9322 proteins in 1919 species: Archae - 67; Bacteria - 7633; Metazoa - 348; Fungi - 130; Plants - 461; Viruses - 1; Other Eukaryotes - 699 (source: NCBI BLink).
Link: InterPro Scan - TAIR