K28948

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28948

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28948

Determination of introduced cDNA(s)

  • J023078G13 - Rice Full-length cDNAs - Original: J023078G13

    full reading [+] show sequence

    Nucleotide sequence: J023078G13 - full reading 
    GACCGCAAAC TACTCCTCCT CTCCTCCTAG CGAAGAGAAG GGAAAGGGTA 
    GCGAAGCCGC CATCGGCGTC GGCGAGCGAG GAGAAGCCAA ATTCCTCTAC 
    TCGATCCGAG CTCCTTCGAT TCGATCCACC TCGTCTCGGT TCCTCTCCAC 
    CCCGCCTGCC AAGATGAGTT TCTTGTTCGG GAAGCGGAAG ACGCCTGCTG 
    AGCTCTTGAG AGAGAACAAG AGAATGCTGG ATCGATCAAT AAGGGAAATT 
    GAACGAGAAA GACAGGGATT GCAAGCCCAG GAGAAAAAAC TCATTACTGA 
    GATTAAGAAA ACAGCAAAGG AAGGCCAGAT GGGTGCTGTC AAAGTAATGG 
    CCAAAGATCT TATTCGAACA CGGCATCAGA TCACAAAGTT TTACCAACTT 
    AAATCTCAGC TTCAAGGAGT TTCTCTAAGA GTTCAGACGC TGAAATCTAC 
    ACAAGCTATG GGTGATGCCA TGAAAGGTGT TACAAAGGCT ATGGGTCAGA 
    TGAACAGGCA GTTAAATCTG CCAGGATTAC AGAGGATTAT GATGGAGTTT 
    GAGCGACAAA ATGAGAGAAT GGAGATGACG AGTGAAGTCA TGGGGGATGC 
    TATAGATGAT GCTTTGGAGG GAGATGAGGA TCAAGAGGAA GAAACTGAGG 
    AGCTTGTGAA TCAAGTCCTT GATGAAATTG GCATTGATAT TAACCAAGAG 
    CTTGTAAAGG CCCCTTCGGC TGCCGTCGCT CAGCCCGCAG CAGCAGGAAA 
    GGTTGCGCAG GCTGAATCTG CTGGTGGGAA TGGTGACGGT GGAATCGACG 
    CGGATTTGCA GGCGAGGCTG GACAATCTGA GGAGAATGTA GATTTCCGAC 
    CGGTGCTGTG CTGCACTAAC TAAAAAAAGA GTGCTAGTGC CTTGTAGCAC 
    CATATCTTGT GAATATGTAT TTTCTACTAA AAGATTTGCA AGTGTACTTA 
    GAGATTTGGA AATACATACT CGATATGTGG TATACTTTAT ACTAATAATG 
    ATCGATGAGC AACCTCTTTG CTCCGATGTG TCATTCTTCT TACT

    Gene models with high sequence identity

    1. AT2G06530.1 [+] show detail - SNF7 family protein
      E-value: 6e-77; Score: 284.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam Snf7 1.9e-43
    HMMPanther SNF7-LIKE PROTEIN (BC-2) (PUTATIVE BREAST ADE 2.1e-141
    HMMPanther SNF7-RELATED 2.1e-141

    See the detailed result >

    AT2G06530.1

    Model type
    Protein coding
    Short Description
    SNF7 family protein
    Computational Description
    VPS2.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting-associated protein 2.3 (TAIR:AT1G03950.1); Has 2524 Blast hits to 2516 proteins in 271 species: Archae - 17; Bacteria - 20; Metazoa - 1106; Fungi - 512; Plants - 555; Viruses - 5; Other Eukaryotes - 309 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR