K28951

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28951

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28951

Determination of introduced cDNA(s)

  • J033107M16 - Rice Full-length cDNAs - Original: J033107M16

    full reading [+] show sequence

    Nucleotide sequence: J033107M16 - full reading
    GACGTAGCCC CGGAGGAAGA AGACTCTCGG TCAAGAGTCA AGACTTCGAC 
    CAATCGACCA ACACGAAGCG GCAAAGGAAA CGTCACCGTC GCGGCGTCGC
    CGATGGAGTC GTCCGCCTCC TCCTCGGCCG CGGTGGCGGC GGAGGGGGCG
    CCGGCGACGG GGGAGCAGCT GGCGGTGTTC TGGCACGAGG GCATGGTGGC
    CCACGACGCC GGCCGCGGCG TGTTCGACTC GGGCCGCGAC CCGGGCTTCC
    TCGACGTGCT CGACCAGCAC CCGGAGAACG CCGACCGCGT CCGCAACATG
    GTCTCCATCC TCCGCCGCGG CCCCATCGCG CGCTTCATCT CCTGGCACTC
    CGGCCGCCCC GCCCACGCCG CCGAGCTCCT CTCCTTCCAC TCCGCCGAAT
    ACATAGAGGA GCTCGTGCAA GCAAATGCCG TTGGTGCCAA GAAGCTGTGT
    GAAGGCACTT TCTTGAACCC TGGATCCTGG GGTGCTGCGC TTCTGGCGGC
    TGGAACAACT TTATCAGCGA TGAAGCACAT ACTAGATGGA CATGCCAAGA
    TTGCCTATGC GTTGGTCCGC CCCCCTGGCC ATCATGCGCA ACCGGACCGT
    GCTGATGGTT ACTGCTTCCT GAACAATGCT GGGCTTGCAG TGAAGCTGGC
    TCTGGATTCA GGACGCAGAA AGGTTGCTGT TGTTGATATT GACGTGCACT
    ATGGAAATGG CACTGCGGAG GGCTTCTACC ACACAGACAG CGTGCTGACG
    ATCTCTCTTC ACATGAAGCA TGGTTCATGG GGTCCATCAC ATCCCCAGAG
    TGGCTCGGTG GATGAGATTG GTGAAGGCAG GGGTCTTGGG TACAATCTCA
    ATATTCCTTT GCCTAATGGC AGTGGGGATG CAGGGTATGA GTATGCGATG
    AATGAATTAG TTGTTCCAGC CATAGAGAAG TTTCGTCCTG AGCTTTTGGT
    TTTTGTTGTT GGCCAAGATT CTAGTACGTT TGATCCCAAT GGAAGACAGT
    GCTTAACCAT GGATGGTTAT CGGAAAATTG GGCAAATAAT GAGAGGCATG
    GCTGATCAAC ACAGCAATGG TCAAATATTG ATCGTGCAGG AAGGGGGTTA
    TCACATCAGC TATTCGGCAT ATTGTCTGCA TGCAACACTA GAAGGTGTTC
    TGAATCTACA AGCCCCGTTG CTTGATGATC CAATCGCCTA TTATCCAGAG
    GATGAGAAAT ACACCATGAA AGTTGTGGAC ATCATGAAGA AATGCTGGAA
    AGAATCTATT CCATTCTTGA AGGACATATA GAAATCCATT TCTTTTAGAT
    GCGAGTGCCC TTGAACCTCA ATTTCATATC AGTGCACCGT CTATTCTTAT
    GGCCTTTTGA CTGAAAGTAC ATGCATTCAT TGGAGCAACA TTCGAGTGCT
    TGTTCCTTTC ATAAACCCCT GATTCACAAG TTCTCAATTC ACATTGATGG
    GCTGTTTGAT TATGCAATGG GGCATTGGGG CTACAGCCAC CTGTATTATA
    TAAGCGCACC AGTTCCAAGT CTGAAACCAA GTGCCAAGTC TGAATTATTG
    TCTAGCAAGG AATGCTACCT GCTGCCACAT CACTCGTCAA CTTACTGCCT
    ACAGCAATAC TGGAAGGAAT ATATGTGGGC GATGATAAGG TGATCCATTT
    TACTAGAGGA AGGGGCCAGG AGGTCGGAAC AGGAACTTTC ATTGACCTCC
    TCCTTATGAG CTCTGGTCCT AATACAAACA CTCCATGTTC AATATGCAAC
    AATGAAGGTG CCACCACCAA TACGGAGACA AATGGTGTGG TATCCTCTTG
    CCTCAACTGC TTCCTGTCAG GGGGCGCCCT CTACCGTTTC GAGTATGCTG
    TCAACCCAGC ACTTTTCCTT GCCAAAGCGC GAGGAGGGAC GTGCACGCTT
    GCCCCAACTG ATCCAGATGA GGTTGTTGTG CGCCGTGCCA ATCACTTGCT
    CAGCAATGGT TTCAGGTGCT ACAACCTGTT CAAGAGCAAC TGTGAGGACT
    TCGCGATATA CTGCAAGACA GGCCTCCTTG TGGCAGAGCA AGGTGTCGTC
    GGGCAGAGTG GGCAGGCCAT CTCCATCATC GGTGGACCTC TTGCTGCGGT
    GATTTCAACC CCATTCCGCC TAGTAACCAC GAATATCTAT GGAATGGCGG
    TGATGGCAGT TGGGGTGTAT TGCGCCAGCA GGTACGCAGC TGACATTGGC
    AACCGGCGAG ATGTGCTGAA AGTGGAAGTG GAGGACCTGA CTGCTGGGCT
    GGCGAGTGGC AGGATTCGTG CCGTGGAGAA CATCAGTCAG TTGGTTGCTC
    CGGCAGAAGC CCAAGGTCTG GCCGTAACCG CACCTGTTGC TGCTTAAAGT
    GCACCACTGA GATCTATACA TTACTCCAGA CCTTCTGCTG CTAAATTTAT
    GGATGTTTCG TTGTCAAATA TCAGCTGAAA TTGTGTACCA GAGTGAGCCT
    CCCATTCAGC AATAGCTGTA CAAACAATGA AAAAACTTAT ACGCCCGTTT
    CTGCCATCAA CTGTTATGTG TGGCTTATCT ACTGTTGTAT AAATTATGAA
    CATGGAAGTG TGGTGCTTGT CGATTTGCAA CTCAAGATTG TGACAGCTCT
    CTTATTTTAG GCAGTAATTC CACTTCATTA GGAGACGTTT GCTTGTAAGT
    GGGAAATATA ATTCACCTGA CCTGAGCCAA CTTGGGATGT AGAGGTTAAC
    TTTCATTCAT GGCCTCATTG GGAGTTGTTG GGACACGGAA AAACTGCAAT
    TTTGTTTGAG AATTCATATA ACAGCAAAGC TCATAAGCCA TTTTTTCACT
    CG

    Gene models with high sequence identity

    1. AT1G08460.1 [+] show detail - histone deacetylase 8
      E-value: 5e-146; Score: 515.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Histone deacetylase superfamily 4.2e-87
    HMMPfam Histone deacetylase superfamily 4.7e-79
    HMMPfam NC 4.8e-19
    superfamily Arginase/deacetylase 2.1e-95
    FPrintScan Histone deacetylase superfamily 0.0000000000017
    FPrintScan Histone deacetylase superfamily 0.0000000000017
    FPrintScan Histone deacetylase superfamily 0.0000000000017
    HMMPanther HISTONE DEACETYLASE-RELATED 3.5e-162
    HMMPanther Histone deacetylase superfamily 3.5e-162

    See the detailed result >

    AT1G08460.1

    Model type
    Protein coding
    Short Description
    histone deacetylase 8
    Computational Description
    histone deacetylase 8 (HDA08); CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 5 (TAIR:AT5G61060.1); Has 9025 Blast hits to 8820 proteins in 1442 species: Archae - 223; Bacteria - 3178; Metazoa - 1474; Fungi - 641; Plants - 477; Viruses - 0; Other Eukaryotes - 3032 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR