K29002

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29002

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
root (PO:0009005)
  • abnormal (PATO:0000460)
    (Root::Others)
petal (PO:0009032)
  • abnormal (PATO:0000460)
    (Flower::Shape::petal)
T2  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29002

Determination of introduced cDNA(s)

  • J023036J23 - Rice Full-length cDNAs - Original: J023036J23

    full reading [+] show sequence

    Nucleotide sequence: J023036J23 - full reading 
    GATTCACAAC CCATACACAC TCTGTGCGCG TGTGTGTCTC TATGATGTCG 
    GCGTCGCCGG AGTTCTACAA GCCGGCGCCG GTGTTCTCGC CGTGCAGCTC 
    GCCGCTGCGG CTGCTGCAGC AGCAGCACGG GGAGGATCAT CAGGAGGAGT 
    ACGGCTACGG CAGCAGCGGC GGCTGCTGCA GGACGCCGAC GGGAGGGGAG 
    AGCAACCTGA AGGCGCCAGG GACGTGCCCG CCGGCGCCGA GGAAGCCGCG 
    CGCGCCCGCC GCGCCGTGCC GGAAGCGGCT GTTCGAGGTC GAGGTGTTAA 
    GCCTCCGCCT CGAGGAGCTC GAGCGCCTCT TCTGGCGCCC TCCGCCGCCG 
    CCGCCGACGA CGCAGCCGCA GCCGCAGCCG CAGCAGCCGC CGCAGAAGCG 
    CCGGAGGGTG GCCAAGCTCG GCAGCTAGCT AGCTCGCCGG AGTAGCACAC 
    GTGTGCGTGG ATGGCCATAA GTGGTGTTGG TTGGGTTAGT TACTAGAGCT 
    AAAGCTAGAG TAGTTCGGAG TTGGTAGGAT TTAGGCGTAC TGGCGTTTTT 
    ACTGCTGTAC TTGCACTATA TTTCTACTGC TCAAATTATC TCCATGGCTA 
    GTATAGCTGG TTGTACACTT TGTACTATAC CTGCCTAGCT AAGGTTGCTA 
    CTACTACTAC TGTAGCGTAT CAGTGCAGTT TATACTAGTA TCTGTGTATG 
    TGATGGCATT GGGGGTGTGT ACTCCTGGTA CGTATTAGCA ATCAATAGGA 
    GCTTAGCTTG AATTTGCTTC CATGCATATA TGGCAGTTGC AGTGCAGCCT 
    GTGAAGTAAT GACAAGTTGT ATGATCCGTG TATACATCCA TCAATGTATC 
    AGTGAATCAA TCCTTGC

    Gene models with high sequence identity

    Not founds.

     

    InterPro Scan Digest

    See the detailed result >

  • J033115O22 - Rice Full-length cDNAs - Original: J033115O22

    full reading [+] show sequence

    Nucleotide sequence: J033115O22 - full reading 
    GAAGGCCTTC GTCTCGACAC GTTTGCATTG CAGCAGCTCA TAAGTTTCTT 
    CTTCGTTTCT GCTCCCAGTG CTAAGGCAGC ACAGTCGTTC GTCGCCATGC 
    CAGGGCTCAC CATCGGCGAC ACCGTCCCCA ACCTGGAGCT GGACTCCACC 
    CACGGCAAGA TCCGCATCCA CGACTTCGTC GGCGACACCT ATGTCATCCT 
    CTTCTCCCAC CCCGGCGACT TCACCCCGGT CTGCACCACG GAGCTGGCAG 
    CCATGGCCGG CTACGCCAAG GAGTTCGACA AGAGGGGCGT CAAGCTGCTC 
    GGCATCTCCT GCGACGACGT GCAGTCTCAC AAGGACTGGA TCAAGGACAT 
    CGAGGCCTAC AAGCCTGGGA ACCGCGTGAC GTACCCGATC ATGGCCGATC 
    CGAGCCGCGA GGCCATCAAG CAGCTGAACA TGGTCGACCC GAACGAGAAG 
    GATTCCAACG GCGGCCACCT CCCGTCCCGC GCGCTGCACA TCGTCGGCCC 
    CGACAAGAAG GTGAAGCTGA GCTTCCTGTA CCCGGCGTGC GTGGGGCGGA 
    ACATGGATGA GGTGGTGCGT GCGGTCGACG CGCTGCAGAC GGCGGCGAAG 
    CACGCGGTGG CGACGCCGGT GAACTGGAAG CCCGGCGAGC GCGTCGTCAT 
    CCCTCCCGGC GTCTCCGACG ACGAGGCGAA GGAGAAGTTC CCCCAGGGGT 
    TCGACACCGC CGACCTGCCG TCCGGCAAGG GCTACCTCCG CTTCACCAAG 
    GTCGGCTAGA TCATATCGAT ATCGACCTCG CTCTTCGTAC ATCATGTGCG 
    CCACGCGTGC GTGATAGCGT GTGCTGGCGT GATGACTATG CGAGATGCAT 
    CCCTGTGTGT GTTGGTGTGG ATAATGCCGC TACGTTTGGA ACAGTAGTGC 
    ATTTACTCTG TGCTACTGTC TGAACTTTGG CTGTTTGGCA GACTGTTTAT 
    GTACCCGTAT GTTCGCCCCT GTACTAATAG AGTGGGTGTT GTGGTTGGCA 
    AGTACTCTCC TCGGACAACA TTTAACTTTG ACTACTAATA ACAAACAAAT 
    TAAAAAGATC AATCAGATGT TACTAGACAT CTTAATTTTA TT

    Gene models with high sequence identity

    1. AT1G48130.1 [+] show detail - 1-cysteine peroxiredoxin 1
      E-value: 6e-88; Score: 321.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Thioredoxin-like 17.208
    Gene3D Thioredoxin fold 1.3e-54
    HMMPfam Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 7e-32
    HMMPfam Peroxiredoxin, C-terminal 0.000000000000011
    superfamily Thioredoxin-like fold 2.5e-63
    HMMPanther PEROXIREDOXIN 6 RELATED 1.9e-127
    HMMPanther PEROXIREDOXIN 1.9e-127

    See the detailed result >

    AT1G48130.1

    Model type
    Protein coding
    Short Description
    1-cysteine peroxiredoxin 1
    Curator Summary
    encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought.
    Computational Description
    1-cysteine peroxiredoxin 1 (PER1); FUNCTIONS IN: thioredoxin peroxidase activity, antioxidant activity; INVOLVED IN: maintenance of seed dormancy, response to desiccation; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, aleurone layer, seed; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Peroxiredoxin, C-terminal (InterPro:IPR019479), Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: 2-cysteine peroxiredoxin B (TAIR:AT5G06290.1); Has 11559 Blast hits to 11559 proteins in 2567 species: Archae - 531; Bacteria - 7064; Metazoa - 1157; Fungi - 321; Plants - 349; Viruses - 0; Other Eukaryotes - 2137 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR