K29007

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29007

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29007

Determination of introduced cDNA(s)

  • J023122C05 - Rice Full-length cDNAs - Original: J023122C05

    full reading [+] show sequence

    Nucleotide sequence: J023122C05 - full reading
    GATTTCCAGT TGCAGCAAGA GCTGCCTCCT AGCTCTCTTC CTGCCATCCA 
    TGGCAAATGC TTCCCTCCAA TCCTTTCTTC TTCACCACCA CCATTCTTTC
    CTTAGCAATG GTATCCATGA GGGCTCCTCC CCTTCTATAA TTCTCAAGCT
    CACAACAAAC AGCAACAGCA GCATTTCATT CAAGCTCTTC TCCAACACCA
    CCTCCTCCTC ATCATCATCA GTGACCACCA CAGCATCAAC CCCCAACTCA
    CCGGTGACCC CTGCTCCGGT AACAGCCTCG TCTCCGCCAC CGCCTTCGCT
    GGAGCTCCTG GGCGCCCAGC TCGCCGAGAG GGATTACCGG CAGGCCGACG
    AGACCACCCG CGCGCTCCTC ATCGAGCTCG CGGGCGAGCC AGCTCGGCGC
    CGAGGGTACG TCTTCTTCTC GGAGGTGCAG TTCATCTCCG CCGATGACCT
    CCGGGCCATC GACGCGCTCT GGCAGGAGCA CAGCGGTGGC CGGTTCGGGT
    ACAGCGTGCA GCGGCGGCTG TGGGAGAAGT CGCGGCGCGA CTTCACCCGC
    TTCTTCATCA GGGTTGGGTG GATGAAGAAG CTTGACACCG AGGTGGAGCA
    GTTCAACTAC AGGGCCTTCC CTGATGAGTT CATCTGGGAG CTGAATGATG
    ACACGCCAGA GGGGCATCTC CCTCTCACCA ATGCCCTCAG AGGGACACAG
    CTCCTGGGCA ACATCTTCAC ACATCCTGCC TTTGAAGAGG AGCAAGAAGA
    TGAATTAGCA GCAGAGGAGA ATGACACACC TGATAACACT GGTCAGAGTA
    AGGATGGCAG CAAAGGGAAG GAGAGGCCAA AGTTCATGAG AGATTTCTTC
    AAGCCTGACT ACTCCTTTTG AGATTGGGGG GTAATTAAAA AGCATGGGAG
    TTTGTGATGC AGAGATGCTG GTCATGGTGC AATTGATTTA GAAAAAAAAA
    AAAAGGAAAC ATGTATCCGT AGTTCATCTG GATTGTTATG TCCTGTAAAC
    ATGCGTGGGA AACTGCACAA TATATTATGA ATATAATTGT TTGAGATGTT
    TGCTCTGCT

    Gene models with high sequence identity

    1. AT3G59400.1 [+] show detail - enzyme binding;tetrapyrrole binding
      E-value: 4e-53; Score: 205.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G59400.1

    Model type
    Protein coding
    Short Description
    enzyme binding;tetrapyrrole binding
    Curator Summary
    GUN, genomes uncoupled, is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast. Binds to the magnesium chelatase complex and promotes formation of the substrate,a tetrapyrrole signaling molecule. Porphyrin-binding protein that enhances the activity of Mg-chelatase. Although required for chlorophyll accumulation under normal growth conditions, GUN4 is not essential for chlorophyll synthesis.
    Computational Description
    GENOMES UNCOUPLED 4 (GUN4); FUNCTIONS IN: tetrapyrrole binding, enzyme binding; INVOLVED IN: chlorophyll biosynthetic process, chloroplast-nucleus signaling pathway, positive regulation of catalytic activity; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GUN4-like (InterPro:IPR008629); Has 685 Blast hits to 680 proteins in 101 species: Archae - 0; Bacteria - 474; Metazoa - 4; Fungi - 2; Plants - 53; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR