K29007

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29007

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29007

Determination of introduced cDNA(s)

  • J023122C05 - Rice Full-length cDNAs - Original: J023122C05

    full reading [+] show sequence

    Nucleotide sequence: J023122C05 - full reading 
    GATTTCCAGT TGCAGCAAGA GCTGCCTCCT AGCTCTCTTC CTGCCATCCA 
    TGGCAAATGC TTCCCTCCAA TCCTTTCTTC TTCACCACCA CCATTCTTTC 
    CTTAGCAATG GTATCCATGA GGGCTCCTCC CCTTCTATAA TTCTCAAGCT 
    CACAACAAAC AGCAACAGCA GCATTTCATT CAAGCTCTTC TCCAACACCA 
    CCTCCTCCTC ATCATCATCA GTGACCACCA CAGCATCAAC CCCCAACTCA 
    CCGGTGACCC CTGCTCCGGT AACAGCCTCG TCTCCGCCAC CGCCTTCGCT 
    GGAGCTCCTG GGCGCCCAGC TCGCCGAGAG GGATTACCGG CAGGCCGACG 
    AGACCACCCG CGCGCTCCTC ATCGAGCTCG CGGGCGAGCC AGCTCGGCGC 
    CGAGGGTACG TCTTCTTCTC GGAGGTGCAG TTCATCTCCG CCGATGACCT 
    CCGGGCCATC GACGCGCTCT GGCAGGAGCA CAGCGGTGGC CGGTTCGGGT 
    ACAGCGTGCA GCGGCGGCTG TGGGAGAAGT CGCGGCGCGA CTTCACCCGC 
    TTCTTCATCA GGGTTGGGTG GATGAAGAAG CTTGACACCG AGGTGGAGCA 
    GTTCAACTAC AGGGCCTTCC CTGATGAGTT CATCTGGGAG CTGAATGATG 
    ACACGCCAGA GGGGCATCTC CCTCTCACCA ATGCCCTCAG AGGGACACAG 
    CTCCTGGGCA ACATCTTCAC ACATCCTGCC TTTGAAGAGG AGCAAGAAGA 
    TGAATTAGCA GCAGAGGAGA ATGACACACC TGATAACACT GGTCAGAGTA 
    AGGATGGCAG CAAAGGGAAG GAGAGGCCAA AGTTCATGAG AGATTTCTTC 
    AAGCCTGACT ACTCCTTTTG AGATTGGGGG GTAATTAAAA AGCATGGGAG 
    TTTGTGATGC AGAGATGCTG GTCATGGTGC AATTGATTTA GAAAAAAAAA 
    AAAAGGAAAC ATGTATCCGT AGTTCATCTG GATTGTTATG TCCTGTAAAC 
    ATGCGTGGGA AACTGCACAA TATATTATGA ATATAATTGT TTGAGATGTT 
    TGCTCTGCT

    Gene models with high sequence identity

    1. AT3G59400.1 [+] show detail - enzyme binding;tetrapyrrole binding
      E-value: 4e-53; Score: 205.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G59400.1

    Model type
    Protein coding
    Short Description
    enzyme binding;tetrapyrrole binding
    Curator Summary
    GUN, genomes uncoupled, is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast. Binds to the magnesium chelatase complex and promotes formation of the substrate,a tetrapyrrole signaling molecule. Porphyrin-binding protein that enhances the activity of Mg-chelatase. Although required for chlorophyll accumulation under normal growth conditions, GUN4 is not essential for chlorophyll synthesis.
    Computational Description
    GENOMES UNCOUPLED 4 (GUN4); FUNCTIONS IN: tetrapyrrole binding, enzyme binding; INVOLVED IN: chlorophyll biosynthetic process, chloroplast-nucleus signaling pathway, positive regulation of catalytic activity; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GUN4-like (InterPro:IPR008629); Has 685 Blast hits to 680 proteins in 101 species: Archae - 0; Bacteria - 474; Metazoa - 4; Fungi - 2; Plants - 53; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR