K29017

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29017

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29017

Determination of introduced cDNA(s)

  • J023001I03 - Rice Full-length cDNAs - Original: J023001I03

    full reading [+] show sequence

    Nucleotide sequence: J023001I03 - full reading 
    GGCTTCTCCT CCGTATCCTC CTCCAGATAG CGGCGGCTGC CTCGCCTTCT 
    CCGACGAGCT CCACCGCCGA GTCGCCGCCC CTTGCCAGGA CAGGATGGTG 
    GTGGCCACGG AGGAAATGGC GGTCTACTGC TTCGACGCCC TCGTCTCCCA 
    CTACAGCGGC GACCAGCCGC CGCCGCCCGC CTTCGAGGAG GGCATCCACC 
    CATTGTTTGT CACCTGGAAG AAGGCTACCA ATGGTTCAGA ACCACGCCTT 
    CGAGGATGCA TTGGAACCTT GGAGGCTCGT CAGATTGTCA CTGGCTTCAA 
    GGAGTATGCG CTCACAAGTG CATTGAGGGA CCGCCGCTTT CCTCCTATAC 
    AGTCGAAAGA ACTGCCGTAT TTGGAGTGTA CAGTATCTAT ACTGACCGAA 
    TATGAAACTG CACTTAACCA CCTTGACTGG GAGGTGGGTA AGCATGGGTT 
    AATTATTGAA TTCACTGATC CAGACTATAA CATGAGGCGC AGTGCAACTT 
    ATTTACCTGA GGTTGCTGCC CATGAAGGAT GGACACATCT AGAGACCATT 
    GACTCACTGA TGAGGAAGGC AGGTTACAAT GGTACCATAA CCGACTCTTT 
    GAGGAAGAAA CTCCGTGTCA CCCGCTACCA GAGTACCTTG TACACTATGC 
    ACTATGGTGA ATACGCTGCC TACGTCAAGA AGAACAGAGG AGCTGCACCA 
    GAAATTAACG GGGCACCTAT AATTAATGGC TTCAAACCAG GCCATTGAAT 
    CATCTGTATT GCATCATCTA AAATGACTTT ATAATTTATC TGGGAGCACC 
    TGGGGTGAGA ATTTGTTTGG AAAACTCCAC CCCTTGCCGC TCATTGATAT 
    GCCATCATTT TCATTCGAAA GAAAGGGGAA GCTATGACAG CATATCCCCT 
    AAATTATGCC GCCTGGACAA ACAGTGGTGA ATTAGTTATG TATCTTGCAA 
    AAATTATGGG CTTCCGGTGC CCAAAAAATG ATGGCATGAA TTGATTCAAG 
    CTGCTTTGTT ACCC

    Gene models with high sequence identity

    1. AT2G38710.2 [+] show detail - AMMECR1 family
      E-value: 1e-88; Score: 323.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan AMMECR1 31.002
    HMMTigr AMMECR1 2.9e-23
    HMMPanther AMMECR1 HOMOLOG 7.2e-127
    Gene3D no description 2.5e-27
    HMMPfam AMMECR1 2.8e-48

    See the detailed result >

    AT2G38710.2

    Model type
    Protein coding
    Short Description
    AMMECR1 family
    Computational Description
    AMMECR1 family; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMMECR1 (InterPro:IPR002733); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR