K29036

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29036

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29036

Determination of introduced cDNA(s)

J013140N04 - Rice Full-length cDNAs - Original: J013140N04

full reading [+] show sequence

GACTCTCTCC GCCCTCCTAA ACCCTACGAC CATGCCGACC CTCGCCGCCG 
CCGCCGCCGC CGCCCGCCGC GCCGGCGGGG CACTGCGATA CGCCGTGCTG 
GGCGGGGTTC GGTCGCTCTC ATCCCTCCAG CCGTCATCCT CCTCCTCCGC 
CGCAGCCGCC GCCAGCGAGG AGGTGCTGGT GGAAGGCAAG GCCAGCGCGC 
GCGCCGCCGT GCTCAACCGC CCCGGCCATC TCAACGCGCT CACGACCACC 
ATGGGAGCTA GGCTCAATAA GTTTTATATG TCATGGGAGG ACAACCCTGA 
TATTGGCTTT GTCATGATGA AGGGCAGCGG CCGAGCATTC TGTGCTGGTG 
GGGATGTTGT TAGGTTGCAC CAGCTTATAA GTGAAGGAAA GTTGGACGAG 
TGTAAGGATT TCTTCAAGAC TTTGTACAGT TTTATTTATG TTCTGGGCAC 
ATACTTGAAG CCACATGTTG CCATTCTTGA TGGTGTTACC ATGGGTGGAG 
GTGGAGGTGT TTCCATTCCC GGAACATTTC GCATTGTCAC TGATAGAACG 
GTATTTGCAA CTCCAGAAGT ACATATTGGC TTCCATCCTG ATGCTGCTGC 
CTCCTTTTAT TTGTCCCATC TGACTGGTCA TGTTGGTGAA TATTTGGCCT 
TGACTGGTGA AAAACTCAAT GGAGTGGATA TGATCGCACT TGGCCTTGCT 
ACACACTATT CCATGAGTGA TCGGTTGAAT CTGGTTGATG AACGCCTTGC 
AACATTGTTA ACTGATGATC CATCAGTTAT TGATACTTCC CTTACACATT 
ATGGAGATCT TGTGTATCCA GATAAGAGTA GCATTGTTCA TAGGCTGGAG 
GTTATAGATA AATGTTTCAG CCTTGAAACA GTCGAGGAGA TTGTGGATGC 
CATGGAAATT GAAGCAGCTA GGTTAAATGA AGATTGGTCT ACCTTGGCCC 
TGAAACGGTT GAAAGAGGCT TCTCCTCTTG CGTTGAAAGT TTCACTGCGA 
TCGATACGTG AAGGTAGATA CCAGACACTT GATGAATGCC TTGTGCGTGA 
ATACCGCATG TCTATCAATG GAATCTCAGA GAAATTTTCT CATGAATTTC 
GTGAGGGTGT CAGAGCACGT CTTGTGGAGA AGGACCTAGC TCCAAAGTGG 
GATCCACCTG CCCTTGAGTA TGTATCAGCG GACATGGTCG ATTCTTACTT 
TGCTCCCCTG GGTGAATTTG AGCCTGAGTT GACACTGCCT ACTGAATCGC 
GAGAGGCATT TGTATGATGA CTCTGCATGA CAATTCCAAG TAGCGCTTTT 
GTTTGAAGCC TTATAGATTT TTGAGCCCAC ACTGTCGACC GTTGGCAGCA 
CATAATAACA GATAGGATTC TCAATCTATT CTTGTACCAT ATATGCCTTG 
GTGTATTGAA AGGAACTGAT CTCCAAGGTG AACTCCTACC ATTCTCACTT 
TCATAAATTA ATGCCTTCGC TTCATTTCAT TTATACT

Gene models with high sequence identity

AT4G31810.1 [+] show detail - ATP-dependent caseinolytic (Clp) protease/crotonase family protein
E-value: 5e-131; Score: 464.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	3.5e-36
superfamily	ClpP/crotonase	5.2e-54
HMMPanther	ENOYL-COA HYDRATASE-RELATED	6.7e-82
Coil	coiled-coil	0
HMMPfam	Crotonase, core	2.7e-20

See the detailed result >

AT4G31810.1

Model type: Protein coding
Short Description: ATP-dependent caseinolytic (Clp) protease/crotonase family protein
Computational Description: ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: 3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity; INVOLVED IN: fatty acid beta-oxidation, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT3G60510.1); Has 22679 Blast hits to 22670 proteins in 1880 species: Archae - 357; Bacteria - 15693; Metazoa - 1078; Fungi - 640; Plants - 575; Viruses - 0; Other Eukaryotes - 4336 (source: NCBI BLink).
Link: InterPro Scan - TAIR