K29101

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29101

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29101

Determination of introduced cDNA(s)

  • J013107L04 - Rice Full-length cDNAs - Original: J013107L04

    full reading [+] show sequence

    Nucleotide sequence: J013107L04 - full reading 
    GATTTCTCTA ACACACGCTA TTCATTCGGC TGTTTTTTTT ACTCATTTTC 
    ACCATATTTT GCTCTTTCAA TTTATTTTTT TCGGTTGGTG ATTTATTCCC 
    GATTACTCTG TGCCGTGTGT CAATTAACCC TCTCTTTCTA AAAATCGAAC 
    TCAAAAAAGA ACGGATTCTA ATCTTTTTTT TTTTTTTGTT AAAATTTTGT 
    TTATAATTAT TCTTGTTTAG TTTTAAATTT TATTTGTTTA AGTATCTCTA 
    AAGATAATCA AAATGCGTGA ATGTATTTCA ATCCATGTTG GTCAAGCCGG 
    TGTTCAAATG GGTAATTCTT GTTGGGAATT ATACTGTTTG GAACACAATA 
    TTACACCGGA TGGTACAATG CCAAGTGATA CTACATTAGG TAGTAGTGAT 
    GATTCATTTA ACACTTTTTT CTCAGAAACT GGAGCTGGAA GGCATGTGCC 
    ACGAGCAGTC TACGTTGATT TAGAACCAAC TGTTGTTGAT GAAGTACGTA 
    CTGGAGTCTA TAGACAACTA TTCCATCCTG AGCAATTAAT TACTGGTAAA 
    GAAGATGCAG CCAATAATTA TGCAAGAGGT CATTATACAA TTGGCAAAGA 
    AATTGTAGAC TTAGTTTTAG ATCGTATTCG CAGGCTTTCA GATCAGTGTA 
    CTGGATTGCA AGGTTTCTTG ATTTTTCATT CGTTTGGTGG TGGTACAGGT 
    TCTGGTTTCA CCAGTTTATT AATGGAGCGT TTAAGTGTTG ATTATGGTAA 
    AAAATCTAAA TTAGAATTCG CTATTTACCC AGCTCCACAA GTTTCAACAG 
    CAGTAGTCGA ACCATACAAT AGTATTTTAA CAACACACAC AACTCTAGAA 
    CATAGTGATT GTGCGTTTAT GGTAGATAAT GAAGCAATCT ATGATATTTG 
    TCGTCGTAAT TTGGATATCG AGAGACCAAC CTACACAAAT TTAAATCGTT 
    TAATTGGTCA AATTGTATCA TCTATAACTG CTTCTTTAAG ATTCGATGGT 
    GCTTTAAACG TTGATTTAAC TGAATTTCAA ACTAATTTGG TACCTTATCC 
    ACGTATTCAT TTCCCTCTTG TCACATATGC ACCTGTCATT TCAGCTGAAA 
    AAGCTTATCA TGAACAACTA ACTGTTTCCG AAATAACAAA CTCTTGTTTC 
    GAACCTTCCA ATCAAATGGT TAAATGTGAC CCAAGACATG GTAAATATAT 
    GGCTTGTTGT CTATTATATA GAGGTGATGT AGTGCCAAAA GATGTTAATG 
    CTGCGATTGC TGCTATTAAA ACAAAAAGAT CTATACAATT TGTAGATTGG 
    TGTCCTACCG GTTTCAAGGT TGGTATCAAT TATCAACCAC CAACTGTAGT 
    ACCAGGAGGT GACTTAGCTA AAGTTCAAAG AGCTGTTTGC ATGTTAAGTA 
    ACACAACAGC TATTGCTGAA GCATGGGCTC GTCTTGATCA TAAATTTGAT 
    TTGATGTATG CAAAGAGAGC ATTTGTTCAT TGGTATGTAG GTGAAGGTAT 
    GGAGGAAGGT GAATTTTCTG AAGCTAGAGA AGATTTAGCT GCATTAGAAA 
    AGGATTATGA AGAGGTTGGT CTAGATAGTG CCGATGCTGG TGAAGACGAA 
    GAAGAAGGTC AAGGTGAATA CTAAAAAGTT CGAAGGATGA TTTAAAGAAA 
    ACTATAGGAA TTACAAAATT TTAAATAAGA ACTGATTAAT TAAATTTTAG 
    ATACATAAAG CATCAATATA CTAATTTTTA AAAAGAGTTA GGTAAAAATG 
    ATTCAGTTAG ATCATTTTAA GAATTGTATT GTTTTTTTTA AATTTTATTA 
    AGTGAAATTT TAAATAAGAT CAATTTATTA TTAAAATCTA ATTTTATTTT 
    TTT

    Gene models with high sequence identity

    1. AT1G50010.1 [+] show detail - tubulin alpha-2 chain
      E-value: 0; Score: 756.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Tubulin/FtsZ, GTPase domain 6.3e-68
    HMMPfam Tubulin/FtsZ, 2-layer sandwich domain 8.8e-52
    superfamily Tubulin/FtsZ, N-terminal 5.3e-105
    superfamily Tubulin/FtsZ, C-terminal 4.9e-86
    PatternScan Tubulin, conserved site 0
    FPrintScan Alpha tubulin 2.6e-116
    FPrintScan Alpha tubulin 2.6e-116
    FPrintScan Alpha tubulin 2.6e-116
    FPrintScan Alpha tubulin 2.6e-116
    FPrintScan Alpha tubulin 2.6e-116
    FPrintScan Alpha tubulin 2.6e-116
    FPrintScan Alpha tubulin 2.6e-116
    FPrintScan Alpha tubulin 2.6e-116
    FPrintScan Alpha tubulin 2.6e-116
    FPrintScan Alpha tubulin 2.6e-116
    FPrintScan Alpha tubulin 2.6e-116
    FPrintScan Alpha tubulin 2.6e-116
    FPrintScan Alpha tubulin 2.6e-116
    FPrintScan Tubulin 4.7e-88
    FPrintScan Tubulin 4.7e-88
    FPrintScan Tubulin 4.7e-88
    FPrintScan Tubulin 4.7e-88
    FPrintScan Tubulin 4.7e-88
    FPrintScan Tubulin 4.7e-88
    FPrintScan Tubulin 4.7e-88
    FPrintScan Tubulin 4.7e-88
    FPrintScan Tubulin 4.7e-88
    Coil coiled-coil 0
    Gene3D Tubulin/FtsZ, GTPase domain 1.4e-122
    Gene3D Tubulin/FtsZ, 2-layer sandwich domain 5.8e-51
    Gene3D no description 1.7e-22
    HMMSmart no description 5.1e-80
    HMMSmart Tubulin/FtsZ, 2-layer sandwich domain 1.1e-59
    HMMPanther Alpha tubulin 1.2e-253
    HMMPanther Tubulin 1.2e-253

    See the detailed result >

    AT1G50010.1

    Model type
    Protein coding
    Short Description
    tubulin alpha-2 chain
    Curator Summary
    Encodes alpha-2,4 tubulin. TUA2 and TUA4 encode identical proteins.
    Computational Description
    tubulin alpha-2 chain (TUA2); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process, response to salt stress; LOCATED IN: tubulin complex, cytosol, cell wall, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin alpha-4 chain (TAIR:AT1G04820.1); Has 22626 Blast hits to 22529 proteins in 4679 species: Archae - 4; Bacteria - 25; Metazoa - 4391; Fungi - 13400; Plants - 1532; Viruses - 0; Other Eukaryotes - 3274 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR