K29101

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29101

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29101

Determination of introduced cDNA(s)

  • J013107L04 - Rice Full-length cDNAs - Original: J013107L04

    full reading [+] show sequence

    Nucleotide sequence: J013107L04 - full reading
    GATTTCTCTA ACACACGCTA TTCATTCGGC TGTTTTTTTT ACTCATTTTC 
    ACCATATTTT GCTCTTTCAA TTTATTTTTT TCGGTTGGTG ATTTATTCCC
    GATTACTCTG TGCCGTGTGT CAATTAACCC TCTCTTTCTA AAAATCGAAC
    TCAAAAAAGA ACGGATTCTA ATCTTTTTTT TTTTTTTGTT AAAATTTTGT
    TTATAATTAT TCTTGTTTAG TTTTAAATTT TATTTGTTTA AGTATCTCTA
    AAGATAATCA AAATGCGTGA ATGTATTTCA ATCCATGTTG GTCAAGCCGG
    TGTTCAAATG GGTAATTCTT GTTGGGAATT ATACTGTTTG GAACACAATA
    TTACACCGGA TGGTACAATG CCAAGTGATA CTACATTAGG TAGTAGTGAT
    GATTCATTTA ACACTTTTTT CTCAGAAACT GGAGCTGGAA GGCATGTGCC
    ACGAGCAGTC TACGTTGATT TAGAACCAAC TGTTGTTGAT GAAGTACGTA
    CTGGAGTCTA TAGACAACTA TTCCATCCTG AGCAATTAAT TACTGGTAAA
    GAAGATGCAG CCAATAATTA TGCAAGAGGT CATTATACAA TTGGCAAAGA
    AATTGTAGAC TTAGTTTTAG ATCGTATTCG CAGGCTTTCA GATCAGTGTA
    CTGGATTGCA AGGTTTCTTG ATTTTTCATT CGTTTGGTGG TGGTACAGGT
    TCTGGTTTCA CCAGTTTATT AATGGAGCGT TTAAGTGTTG ATTATGGTAA
    AAAATCTAAA TTAGAATTCG CTATTTACCC AGCTCCACAA GTTTCAACAG
    CAGTAGTCGA ACCATACAAT AGTATTTTAA CAACACACAC AACTCTAGAA
    CATAGTGATT GTGCGTTTAT GGTAGATAAT GAAGCAATCT ATGATATTTG
    TCGTCGTAAT TTGGATATCG AGAGACCAAC CTACACAAAT TTAAATCGTT
    TAATTGGTCA AATTGTATCA TCTATAACTG CTTCTTTAAG ATTCGATGGT
    GCTTTAAACG TTGATTTAAC TGAATTTCAA ACTAATTTGG TACCTTATCC
    ACGTATTCAT TTCCCTCTTG TCACATATGC ACCTGTCATT TCAGCTGAAA
    AAGCTTATCA TGAACAACTA ACTGTTTCCG AAATAACAAA CTCTTGTTTC
    GAACCTTCCA ATCAAATGGT TAAATGTGAC CCAAGACATG GTAAATATAT
    GGCTTGTTGT CTATTATATA GAGGTGATGT AGTGCCAAAA GATGTTAATG
    CTGCGATTGC TGCTATTAAA ACAAAAAGAT CTATACAATT TGTAGATTGG
    TGTCCTACCG GTTTCAAGGT TGGTATCAAT TATCAACCAC CAACTGTAGT
    ACCAGGAGGT GACTTAGCTA AAGTTCAAAG AGCTGTTTGC ATGTTAAGTA
    ACACAACAGC TATTGCTGAA GCATGGGCTC GTCTTGATCA TAAATTTGAT
    TTGATGTATG CAAAGAGAGC ATTTGTTCAT TGGTATGTAG GTGAAGGTAT
    GGAGGAAGGT GAATTTTCTG AAGCTAGAGA AGATTTAGCT GCATTAGAAA
    AGGATTATGA AGAGGTTGGT CTAGATAGTG CCGATGCTGG TGAAGACGAA
    GAAGAAGGTC AAGGTGAATA CTAAAAAGTT CGAAGGATGA TTTAAAGAAA
    ACTATAGGAA TTACAAAATT TTAAATAAGA ACTGATTAAT TAAATTTTAG
    ATACATAAAG CATCAATATA CTAATTTTTA AAAAGAGTTA GGTAAAAATG
    ATTCAGTTAG ATCATTTTAA GAATTGTATT GTTTTTTTTA AATTTTATTA
    AGTGAAATTT TAAATAAGAT CAATTTATTA TTAAAATCTA ATTTTATTTT
    TTT

    Gene models with high sequence identity

    1. AT1G50010.1 [+] show detail - tubulin alpha-2 chain
      E-value: 0; Score: 756.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Tubulin/FtsZ, GTPase domain 6.3e-68
    HMMPfam Tubulin/FtsZ, 2-layer sandwich domain 8.8e-52
    superfamily Tubulin/FtsZ, N-terminal 5.3e-105
    superfamily Tubulin/FtsZ, C-terminal 4.9e-86
    PatternScan Tubulin, conserved site 0
    FPrintScan Alpha tubulin 2.6e-116
    FPrintScan Alpha tubulin 2.6e-116
    FPrintScan Alpha tubulin 2.6e-116
    FPrintScan Alpha tubulin 2.6e-116
    FPrintScan Alpha tubulin 2.6e-116
    FPrintScan Alpha tubulin 2.6e-116
    FPrintScan Alpha tubulin 2.6e-116
    FPrintScan Alpha tubulin 2.6e-116
    FPrintScan Alpha tubulin 2.6e-116
    FPrintScan Alpha tubulin 2.6e-116
    FPrintScan Alpha tubulin 2.6e-116
    FPrintScan Alpha tubulin 2.6e-116
    FPrintScan Alpha tubulin 2.6e-116
    FPrintScan Tubulin 4.7e-88
    FPrintScan Tubulin 4.7e-88
    FPrintScan Tubulin 4.7e-88
    FPrintScan Tubulin 4.7e-88
    FPrintScan Tubulin 4.7e-88
    FPrintScan Tubulin 4.7e-88
    FPrintScan Tubulin 4.7e-88
    FPrintScan Tubulin 4.7e-88
    FPrintScan Tubulin 4.7e-88
    Coil coiled-coil 0
    Gene3D Tubulin/FtsZ, GTPase domain 1.4e-122
    Gene3D Tubulin/FtsZ, 2-layer sandwich domain 5.8e-51
    Gene3D no description 1.7e-22
    HMMSmart no description 5.1e-80
    HMMSmart Tubulin/FtsZ, 2-layer sandwich domain 1.1e-59
    HMMPanther Alpha tubulin 1.2e-253
    HMMPanther Tubulin 1.2e-253

    See the detailed result >

    AT1G50010.1

    Model type
    Protein coding
    Short Description
    tubulin alpha-2 chain
    Curator Summary
    Encodes alpha-2,4 tubulin. TUA2 and TUA4 encode identical proteins.
    Computational Description
    tubulin alpha-2 chain (TUA2); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process, response to salt stress; LOCATED IN: tubulin complex, cytosol, cell wall, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin alpha-4 chain (TAIR:AT1G04820.1); Has 22626 Blast hits to 22529 proteins in 4679 species: Archae - 4; Bacteria - 25; Metazoa - 4391; Fungi - 13400; Plants - 1532; Viruses - 0; Other Eukaryotes - 3274 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR