K29107

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29107

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29107

Determination of introduced cDNA(s)

  • J013107N09 - Rice Full-length cDNAs - Original: J013107N09

    full reading [+] show sequence

    Nucleotide sequence: J013107N09 - full reading 
    GACTGTACTA GCAACCAGGC TTGATATATT TTAGTACTTC CCCCTTTTTT 
    TTTCCGAGTG TGTGGCTCTC AGATGGAGTT AGTTCATCGT TATCCTAATC 
    TGATTTCAAT TCAAAATTGT TCAATTGATT GTTGGTTATA TGCGTCTAGT 
    ATATGCAGAG GCTGGTTTCC AAGAAGGAGG AGACGAAGAC GATCAGGGTG 
    AAGCCGGGTT GGAAGAAGGG GATGAAGGTG ACGTTCGAGG GGATGGGCGA 
    CGAGCGGCCG GGCTGCCTCC CAGGCGACGC CGTGTTCACC ATCTCGGAGA 
    GGAAGCACAA GGTGTTCAAG AGGAAAGGCA ACGACCTGGT GCTCAAGGCC 
    GAGGTGCCGC TGGTGAGCGC GCTCACCGGC TGGTCCTTCT CCTTCCGGCT 
    GATCGGCGGC GAGAAGATGA GCTTCACGTT CCGCGACGAG GTCATCTCCC 
    CCGGGTACGA GAAGGTGGTC GCCGACGAGG GCATGCCCGT CGTCGCCGCC 
    GGCGGCGGCG GCGAGAAGGC CGCCGCCGCG CGCGGCGACC TCCGGGTGAA 
    GTTCGACGTC GTCTTCCCCA AGAACCTCAC CGGCGAGCAG CGCGCCGGCC 
    TCGCCAGCAT CCTCAGAGCC TGTCCGTGAT CGAATTACCA CACGCATAGT 
    AGTACACATT TTTACAAGTT TTTTTTTTTT GTTTCTACTC GTGTAGAAAA 
    TTTTGGTTTC ATTTTTTGGT GTTGATATAC TAGCGATGGA TCGATCGATC 
    GATCACCCTG CAGGTGAGTA CATAAAGATC GAGTATGAGA TCTGAGCGAC 
    CGTTTTGACG CATATACGTA TATAAATACG GGATGGTTGT TGC

    Gene models with high sequence identity

    1. AT1G11040.1 [+] show detail - HSP40/DnaJ peptide-binding protein
      E-value: 5e-31; Score: 131.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 3.4e-09
    Gene3D no description 1.8e-18
    HMMPfam Chaperone DnaJ, C-terminal 4.8e-23
    superfamily HSP40/DnaJ peptide-binding 7.2e-15
    superfamily HSP40/DnaJ peptide-binding 2.6e-07
    FPrintScan Heat shock protein DnaJ 6.1e-05
    FPrintScan Heat shock protein DnaJ 6.1e-05
    HMMPanther HSP40-RELATED 1.9e-44
    HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 1.9e-44

    See the detailed result >

    AT1G11040.1

    Model type
    Protein coding
    Short Description
    HSP40/DnaJ peptide-binding protein
    Computational Description
    HSP40/DnaJ peptide-binding protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: HSP40/DnaJ peptide-binding protein (TAIR:AT1G44160.1); Has 19507 Blast hits to 13358 proteins in 2831 species: Archae - 102; Bacteria - 8184; Metazoa - 2012; Fungi - 1146; Plants - 786; Viruses - 38; Other Eukaryotes - 7239 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR