K29111

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29111

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29111

Determination of introduced cDNA(s)

J013098B11 - Rice Full-length cDNAs - Original: J013098B11

full reading [+] show sequence

GTCCTGCTCG GCTTCCCCCC CAACCCCCGC CTTCTCCCCT CCGACTCCGG 
CCACCTCCGC GGCGGCGGAG CATCCTAGGG TTTCGCGCCG GCTCGCCGCC 
GGCGTACGGA GAGGGAGGGT GTAACACGCG CAGGCCTGCG CCGTCGTCCT 
GCTCTGGGAA CTTCCGCGTG CAGCGAGGGA TGGACGAGTG GGTTCGCCAG 
GCCGAGGTGT GGGTGGGACA AGCCGAGAGG TGGATCCGGC AGCAGCCTCC 
CGAGCAGGTT TACGTCGCCG TCGCGGTGGT CGCCGTGACG GTTCTGTTGC 
TGGTCGCAGT TTCGTGCCTG AAATCCTCGA AAGCAAACAC CATAGTGCTA 
TCTGGGCTCA GTGGTAGTGG CAAAACTATT CTCTTCTACC AGCTTCGGGA 
TGGATCAACA CATCAAGGAA CTGTGACTTC AATGGAACAA AACAACGATA 
CTTTCGTGCT TCATTCTGAG CTGGAGAGGA GAGGCAAAGT AAAACCTGTT 
CATGTTGTTG ACGTTCCTGG TCATGCAAGG CTCAAACCCA AACTTGATGA 
AGTCCTGCCT CAAGCAGCTG GAATAGTTTA TGTTGTTGAT GCTCAAGATT 
TCTTGTCTAC CATGCATGCT GCTGCAGAGT ACTTGTATGA CATCCTGACA 
AAGGCAACTG TAGTGAAGAA GAGGGTTCCT GTTCTGATAT TCTGCAACAA 
GACAGATAAA GTTACAGCTC ACTCAAAAGA ATTCATCAAG AAGCAATTGG 
AAAAGGAATT AAACAAGCTC CGGGAATCAA GGAACGCCAT ATCATCTGCT 
GACATCACTG ATGAAGTCAA GCTTGGGAAC CCTGGAGAAG CATTTAATTT 
CAGCCAATGC CAGAACAAGG TGACAGTTAC TGAAGGTGCT GGTCTGACCG 
GTAATGTTTC AGCGGTTGAG GAGTTCATTC GTGAGTATGT GAAAGCTTAG 
GCCTTAGAGT TGTCGGACCT TTACAGAATA GAGTTTGTAT TCGTTCAAAA 
TTGTCATCTA AGCGGAGACT GATTTTCCTG ATGGAAGAAG GAAAACCTTC 
ATCATCTCAT CTGCATCTGC TTCATTCCAT TCATGCGTGT GAGAAATTTC 
AACATTTTCT TGAAAGGAAA GCATCGGACA TTCAGTTG

Gene models with high sequence identity

AT5G05670.2 [+] show detail - signal recognition particle binding
E-value: 2e-80; Score: 296.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	SIGNAL RECOGNITION PARTICLE RECEPTOR BETA SUB	1.9e-47
superfamily	P-loop containing nucleoside triphosphate hyd	1.4e-29
Gene3D	no description	6.5e-51
Coil	coiled-coil	0
HMMPfam	Signal recognition particle receptor, beta subunit	8.1e-38
ProfileScan	ARF	8.81

See the detailed result >

AT5G05670.2

Model type: Protein coding
Short Description: signal recognition particle binding
Computational Description: signal recognition particle binding; FUNCTIONS IN: signal recognition particle binding; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Signal recognition particle receptor, beta subunit (InterPro:IPR019009); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G18770.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR