K29112

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29112

Determination of introduced cDNA(s)

J013067N10 - Rice Full-length cDNAs - Original: J013067N10

full reading [+] show sequence

GGGGTCGCCA TGGCGGGGCT CGTCGGCGTG CTCCGCCAGC TCGGGGATCT 
CGCGGAGTTT GCAGCTGAAA TATTTCACGA CCTGCATGAA GATGTGATGG 
CCACTGCTTC TAGAGGGCAT GGTTTAATGC TTCGGTTGCG ACAGTTAGAG 
GCAGAATTTC CTGCAGTTGA GAAGGCCATT ATATCCCAGT CTGACCATTC 
AAATTACCCA CATGATGACG GTGTTGAGTG GCACACAAAT CTTCAGATTG 
ATCAAAATAT GATTACTCAA GGAGATATGC CCCGTTTCAT TTTGGATTCA 
TATGAAGAAT GCCGTGGCCC ACCACGTTTA TTCACATTGG ATAAGTTTGA 
TGTTGCTGGT GCTGGGGCCT CCTTGAAACG ATACTCAGAC CCATCTTTCT 
TCAAGACAGA ACATTCCTCG GACATGATAG AAACGGATGC TGTGATAGAA 
AAGAAGCCCC GCAAAATTAA GAAAAAAGCT TTGCGTTGGA GGAAAGGAGA 
AACACTCGAA TCATTGCTTA TCGCAAACTC TGAATCCCAC ACTACCTCAA 
AGGATCGATC ATCTAGAAAA GTTCCACCAA GGACAACAAA GTTGAAATAC 
AGGTATCCTC GGGAGTCTGA TCATAAGAAC ATTAGCAGAA TATGCAGAGA 
GCATCTGCAA GAAATAATCT CATCACAACA AAAGATCTTC TCCAACTATT 
CTTCGAGGTA CTACCATCCA AAGTTTAGAT TAACTGAGTC AAGTGAAACG 
GCATCCTCAT TTGGAGAAAT AGATAATTTC AGTGCTCGTG CTCAATCTTC 
TGCTAAACTT GAACTGACTA AGGTTGTTCC AATAAACGAG TTTGATACCA 
AGGGGATCGC ACCTACACAC ATTAATGGTT CAGATTGCCT GGAGGCCCTG 
GAGGCAGATG ATAGGCAATT ACAGGCTACA CAGCATGAAC CTGACAAAGT 
GGAAGACGTC TGTAAGAGAT CTCTTGTGGA ACAAAATGCC ATGCTCTCCA 
ACTCTGATAG GATGCAGTCA GTGCAGGAAG AGAATCTTCT ATCAGCTATG 
GTCCCTGCTG ATCAAAATGA TGATCGCTGC AGACCTGATG ACACTGGTAG 
TGATCAGGAG AACTTCGTGG ACGCTCTTAA TAACATGGAA TCAGAGGGTG 
AAGCACATGC TGAGATGAAA ATAAAAAAGG ACCCTGGTGC CAAGATGGAA 
TTGGATGAAT TGAACTTTCA CCGCGATGAA GGTGAAAATG AACGGCACAC 
AGAGTTTTCA GAACTAGGTC ATGTAATAGA CTCATCACCA TGGTTGAATG 
ATTCATACAA TGGTGGAGAA CCAAACCATG CAATATCTTC TAATACAAAT 
TTCAGTGGTG TTGATTGCAC CAATGATGAA GAGCCTTCTA ATGATGTTGA 
CCTAATGGAA ATGGATGTCA GCTCATCATC CAGTGTATTC TCTGACGACA 
ATGATGTTTT TAGGACCAAT GGTAATATGA ATGGTTTTCA ACAATACCAG 
GAGGCATCTT TGTCCAATGA TCATCATGCT GTGATTGCCC ATAGTTCTGA 
TAAACAGTCA TCCCAGAAAT CTAGTGGCTT GGATGGTTCC TCTATCGAAA 
GCAATGATTT TATTGAAAAA CCATTTCACT CATTGGAGGA TGATAAAAAC 
TTTGCACCAG ATGGTACTTC TGTGATATTG GGCAGACCTA ATGATGTATC 
ACAGTGTGAA GAAGAAATTG AAGTTGGAAA TGCTGATGAT TCATTGCTGC 
AACCTACCAT TTCCAATCAA GAAGTACATA GGTCCAATAA CCAACTTGAA 
GGTGTGGCTA TGCACGCAAG CATTTCATCT GGAAAAGTTG CATCTTTCCC 
TGATATGGAT CCTGGTATGT GCACAAAGGA CTTGGAGTTG GACAATGTTT 
TAGTTCCTAA AGAAACTGTT GCAAATACAC CCCCAACAGG TTTAGGTACT 
GATCATATCC ACGAGCATGT GGACGAGCTT GATTCGGGAG TTGCACCAAT 
CAATTCAAGC ATTCAGAGTG ATTCGACATA TGAATCAGAT GATGATGACA 
TGGCTGAAGA TTTGAACTCT CTACCAGAAG ATGATCTATA TAAGCATGAC 
GTAGAGGACC TATATAAGCA TGTTTTAGAG GATGATGGAA TAATTGCGCT 
AGGAAAAGGG CCTTGTTCCA CTAGGGCCAA CATGCATCAA GAGGACCCTA 
TGGAAGTCTC TGATGTGCGT GGGGACTTCT CTAATGGTCA AGAGCTCCCA 
GTACTCACTG AAACTGCATC TCCTCAAGGA GAATTAGTAG GAGGAGGAGA 
GCTCCCATTA CTCACTGAAA CTGCATCTCC TCAAGGAGGA GAAGAAGATC 
TTGCAGATGA GGTGGTTGTG ATCTCTTCTC GTGATCTGAA TGATGAGAAG 
AAGCCATCGT TGGCTGAGGT CCCACTAGCT TGCGGTGATG CCTCTCTGCT 
TGACAGTAGT GCTTCCTGTT TGGAACATGA CGAGTCTACT GAAACAGGAG 
AAATTGCAAA AAGTGATGAA GTTCTGGTCA ATGTTGAGGT TGCAGAAGAA 
TCCATCACTG GCAGGTTTAC TGATGACATG ACACCTTTTC AAGAGGATCT 
TCCTGATGGT GCCAAATATA GTGAGGATGC AGAATTTTTG GCTAATCCTA 
GGGTGGACAA CTCTAGGCAC GATGTGCAAT TACAGTCTAG TTCCCCTTGC 
AGGGAAGAGT TGGAAACAGT GAAAGCTCCA TGTGAAAATC TTTGTGCATT 
AGATGAATCA AGAGAGCATA TATTCGAGAA AAGTGTGTTG CAGATAAACA 
ATCTTCCCCA GCATATTGAA ACAAAAAATA CAGGTGAAGC ATGTAGTGAC 
ATTGATGATA TTCAACATCT TTCAGCATTG CATTGTCCGA AAAATCCTGT 
TTGTCAAGAG GAATTACCAG ACGAGACCAA TCTTAGTGCT GACGTTCAGT 
ATCATTGTGA TGTGGAGAAG GGTGGTGCAG TAATCTTGAA TAGTAAAATG 
GTGGAAGAAC AACCAGAAAA TATTGATTTG GTGAGGGAGC CTCGTGCTCA 
AGATTCTTTT GGTACAAACC CATTCATGGA TCCTGGGTAC AAAGCGAATC 
ATGCTCTAGC TGATCCGTGT CCTAGCTATC AACCATGTTT CTCTGAGGAA 
GAACAGTATT TTATTTCAGA ACTATTAATC CCTCATGGTA ATATGGGAAT 
CGAAGACCTG AATCCGGTTC CGGTTGCTGA TTCCCTCTGG GAACCTGCAA 
CTCCACCTGA TGAGGTGCCA TTGCCATCAG AAGTTATGAC TGAGGAGGAC 
TTCAGATCGT TCTGCCATGA GTACCACGAG ATGGATCTGA CAGCAACGCC 
TGAAAGTATT GATGATAAAC CAGCCTCAGA TTCTAATGTC GTCTCAAGTA 
GTTTGGTGAC CAGTGAGTCG GAGTTCCTCT ATTGTGTCTC TGCAGTACGG 
ACAGGAGTGG ACCAGG

Gene models with high sequence identity

AT2G38440.1 [+] show detail - SCAR homolog 2
E-value: 8e-62; Score: 236.00

InterPro Scan Digest

See the detailed result >

AT2G38440.1

Model type: Protein coding
Short Description: SCAR homolog 2
Curator Summary: Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching. Mutations cause defects in both the actin and microtubule cytoskeletons that result in aberrant epidermal cell expansion. itb1 mutants showed irregularities in trichome branch positioning and expansion. The SHD domain of this protein binds to BRK1 and overexpression of the SHD domain results in a dominant negative phenotype.
Computational Description: SCAR homolog 2 (SCAR2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: SCAR complex, plasma membrane, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding WH2 (InterPro:IPR003124); BEST Arabidopsis thaliana protein match is: SCAR family protein 4 (TAIR:AT5G01730.1); Has 5162 Blast hits to 2275 proteins in 363 species: Archae - 24; Bacteria - 2785; Metazoa - 880; Fungi - 591; Plants - 224; Viruses - 0; Other Eukaryotes - 658 (source: NCBI BLink).
Link: InterPro Scan - TAIR