K29126

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29126

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29126

Determination of introduced cDNA(s)

  • J033060B12 - Rice Full-length cDNAs - Original: J033060B12

    full reading [+] show sequence

    Nucleotide sequence: J033060B12 - full reading 
    GCCTCTCCTC CCCCCTCTCT CTTTCTCGGC GAGGATTGGC TGTGTGATTA 
    GAGAATGGGG CCAAAGAGAG CGAAGTCTAT GCCAAGTCGT AATCGTGCTG 
    GGAATGGATG ACAAAGAATC ACACAGTCAC GAGCTAGAAT GATATGCGCT 
    TTTTAGTCCA TCAAGAAGAA GTGATTGGTT TGTGATCGGT GCTCGCATCG 
    TCGCCATGGG AAGTGCTTGC TCTAGGAAGA GAGGCCAGCT GCTTGTTGAT 
    GAGGAAGATC TCTACAGTGC AAGGTTCTCC AAGAGCAGCA GCTTCAAGTG 
    GCTACTGCAC ACCTTGCCCC GCAGCGGCTC TGATGTACAC AGGAAGGTGC 
    AGGGACCAGT GCCTGTGCGG TGCCCATCGC TAATGGAGCT CTGTGTGGCC 
    AAAGTCCGCG AGGATATTGG GAAGTATTCT GATTTCTCGC TGCTGCCTAG 
    AGATCTTAGT CAGCAGGTAT TTAATGAACT GGTGGAGTGG AACATTCTCA 
    CTGAAGAGTT GCTTGGAGCT TTTCGTGATT GTGCATTGCA GGACATCTGT 
    TTGGCAGACT ACCCTGGGGT GAGGGATGCT TGGATGGAAG TAGCGGCTTC 
    TCAAGGGCAA TCATTGTTAT CTGTTGATAT CTCTTGCTCT GATGTGACTG 
    ATGGTGGACT GAATCAACTC AAGGATTGCA TCAACTTGCA AAGTTTGTCA 
    TGCAATTACT GTGATCAGAT ATCGGAGCAT GGACTTAAAA CATTGTCAGG 
    CCTCTCAAAT GTGACATCCC TGAGCTTTAA AAAATGTTCT GCTGTTACTG 
    CTGAAGGAGC TAAAGCCTTT GCAAACATGG TTAATTTGGG TAGCTTGGAC 
    CTTGAGCGAT GTCCGAAGAT TCATGGTGGA CTTGTTCATT TAAAAGGCTT 
    GAGAAAACTG GAAAAGCTAA ATTTGAGGTA TTGTAATGGC ATCACAGATT 
    CTGATATGAA ACATTTATCA GATCTTACAA ATTTGAGAGA GCTTCAACTT 
    TCTTGCTGCA AAATAAGTGA TCTTGGTGTT TCTTATCTAA GAGGTCTATC 
    GAAGCTAGCT CACCTAAACC TGGAGGGCTG TGCAGTAACT GCTGCTTGTT 
    TGGAGGTTAT TTCAGGATTG GCTTCATTGG TATTGTTGAA TCTTAGTAGA 
    TGTGGAGTAT ATGACGAAGG CTGTGAGCAT TTGGAAGGTC TTGTCAAGTT 
    GAAGGTTCTC AATTTAGGGT TCAACTATAT TACAGATGCC TGCTTGGTTC 
    ATCTAAAAGA ACTGATCAAT TTGGAGTGTT TGAACTTGGA CTCATGCAAG 
    ATTGGTGACG AGGGGCTAGC ACATTTGAAA GGACTTCTGA AACTAAGAAG 
    CTTGGAACTT TCAGACACAG AAGTTGGGAG CAATGGACTT CGTCATCTCT 
    CTGGCCTACG GAATTTGCAG AGCATCAATC TCTCTTTTAC ATTGGTTACG 
    GACATTGGCT TGAAGAAAAT TTCTGGCCTG AATTCACTCA GATCCCTTAA 
    TCTTGATAAT CGCCAAATCA CAGATAATGG TTTGGCAGCT CTTACATGTC 
    TCACTGGGTT GACACACCTT GATCTATTTG GAGCTCGTAT AACTGATGCT 
    GGGACAAACT GCTTGAAATA TTTCAAGAAT CTACAGTCCC TTGAGGTCTG 
    CGGTGGGTTA ATTACAGATG CTGGAGTGAA GAATATCAAA GACCTCAAAG 
    CTCTGACGCT GCTTAACCTA TCTCAAAATG GCAACCTCAC TGACAAATCA 
    TTAGAGCTGA TTTCCCGCCT CACTGCCTTG GTCTCCCTGA ACGTGTCGAA 
    CTCTCGGGTG TCGAATTCTG GGCTCCACCA TCTGAAGCCA CTCCAGAACC 
    TGAGGTCCTT GTCTCTGGAG TCCTGCAAGG TGACCGCGAT TGAGATCAAG 
    AAGCTCCAGT TGGCTGCCCT GCCCAATCTC GTCAGTGTGC GGCCCGAGTA 
    ATCTGGTAGC TGCACATGTG TCCACATGTA AATATCCACC TGCTTAGAGC 
    AGGACAAATG TACATATTCC CACAAGAACA AGCTCGAGTG ATCTGTACGT 
    CAGTCCTGCT TGTATCGGTG TGTCTGGTCG CCCTGGTGCT GAAGGGTCTG 
    ATGGATGGCC TAGTGGTGAA GGGCTGGCAC GTATTTAGGC CGTGTAAATA 
    TGTAGCGGTG CTGATGGGAA GGAACAACTG TAAATATGGC GTGCTTCCTC 
    TGCATTTTCG ATGTTATGTA ATGTTTCGTG TTATCGTGTT AATGAACTGG 
    TATTGTTGCT TGACC

    Gene models with high sequence identity

    1. AT1G15740.1 [+] show detail - Leucine-rich repeat family protein
      E-value: 0; Score: 634.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 34
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 0.031
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 96
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 660
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 730
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 190
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 140
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 5.5
    Gene3D no description 2.1e-22
    Gene3D no description 3.9e-20
    superfamily RNI-like 2.6e-64
    superfamily RNI-like 3.3e-19
    HMMPfam Leucine-rich repeat 0.3
    HMMPanther F-BOX/LRR PROTEIN-RELATED 2 7.5e-119
    HMMPanther F-BOX/LEUCINE RICH REPEAT PROTEIN 7.5e-119

    See the detailed result >

    AT1G15740.1

    Model type
    Protein coding
    Short Description
    Leucine-rich repeat family protein
    Computational Description
    Leucine-rich repeat family protein; BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT4G23840.1); Has 38052 Blast hits to 19856 proteins in 856 species: Archae - 6; Bacteria - 8624; Metazoa - 11681; Fungi - 680; Plants - 12072; Viruses - 79; Other Eukaryotes - 4910 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR