K29142

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29142

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29142

Determination of introduced cDNA(s)

J033129M10 - Rice Full-length cDNAs - Original: J033129M10

full reading [+] show sequence

GCACTTGTCA GACAGCACAA AACATCGATC CAAAAGCACT TCTCGGACAG 
CAAATCGTCT CGATCCTGTT ATTAGTATTC AGGCGCCATG GCAGCTGGAA 
GCTCCCATGT TTCTGCTGAT GCAAGGAAGC TGGTGGGCAA GGTGGCGGTG 
ATCACCGGCG GCGCGAGCGG CATCGGCGCG TGCACGGCGC GGCTGTTCGT 
GAAGCACGGC GCCCGCGTCG TGGTCGCCGA CATCCAGGAC GAGCTGGGAG 
CTAGCCTCGT CGCCGAGCTC GGCCCGGACG CGTCCAGCTA CGTGCACTGC 
GACGTCACGA ACGAGGGCGA CGTCGCCGCC GCGGTCGACC ACGCCGTCGC 
CAGGTTCGGG AAGCTCGACG TCATGTTCAA CAACGCCGGC GTCAGTGGCC 
CGCCGTGCTT CAGGATGAGC GAGTGCACCA AGGAGGACTT CGAGCGCGTG 
CTCGCCGTGA ACCTGGTCGG CCCGTTCCTG GGCACCAAGC ACGCGGCGCG 
GGTGATGGCG CCGGCGCGCC GCGGCAGCAT CATCTCGACG GCGAGCCTGT 
CGTCGTCGGT GTCCGGCGCG GCGTCGCACG CGTACACGAC GTCGAAGCAC 
GCGCTGGTGG GGTTCACGGA GAACGCGGCC GGCGAGCTGG GCCGGCACGG 
GATCCGCGTC AACTGCGTTT CGCCCGCCGG GGTCGCCACG CCGCTGGCGA 
GGGCTGCCAT GGGCATGGAC GACGAGGCAA TCGAGGCGAT CATGGCGAAC 
TCGGCGAACC TGAAGGGCGC AGGCGCACTC AAGGCGGACG ACATCGCCGC 
CGCGGCGCTG TTCCTCGCCA GCGACGACGG CCGGTACGTG AGCGGCCAGA 
ACCTGCGCGT CGACGGCGGC TTGTCCGTCG TCAACAGCAG CTTTGGTTTC 
TTCAGGGACT GAAAATGATT TGGGACCAGT CGTCAGTCGA TCGACAATAC 
TACATTACGT CGTTATATAT GGTTGATGTT ATTTGTGTTG CATTCTTGAA 
TAAACTAGCA TCCATGGTTC CCCGCTTGTT TGCGAGGACA TTCCATCGCT 
AGCTAGATTC TGTCTTGTAT TTGTATTTGT TGGAAGAGTG AAATACATGC 
ATGAACGGTG CTTAAACTAT TCAGGTTTCC TGAACTCTAA AATTAAATTT 
GTATTTTTAT CCTCAAATTT ATATTGGGTG CCACTTATGT GACATGTCAC 
AAAGACGCCT ACATGTCAAT TGGCTAACAG GTTCAGTCAT ACAGAAAATA 
TAAAATTAAA ACTTT

Gene models with high sequence identity

AT2G47140.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
E-value: 4e-47; Score: 186.00

InterPro Scan Digest

Program	Description	E-value
superfamily	NAD(P)-binding domain	5e-71
PatternScan	Short-chain dehydrogenase/reductase, conserved site	0
HMMPanther	SHORT CHAIN ALCOHOL DEHYDROGENASE	9.1e-118
HMMPanther	Short-chain dehydrogenase/reductase SDR	9.1e-118
Gene3D	NAD(P)-binding domain	2.6e-67
HMMPfam	Short-chain dehydrogenase/reductase SDR	5.7e-31
FPrintScan	Glucose/ribitol dehydrogenase	4.5e-35
FPrintScan	Glucose/ribitol dehydrogenase	4.5e-35
FPrintScan	Glucose/ribitol dehydrogenase	4.5e-35
FPrintScan	Glucose/ribitol dehydrogenase	4.5e-35
FPrintScan	Glucose/ribitol dehydrogenase	4.5e-35
FPrintScan	Glucose/ribitol dehydrogenase	4.5e-35
FPrintScan	Short-chain dehydrogenase/reductase SDR	1.1e-09
FPrintScan	Short-chain dehydrogenase/reductase SDR	1.1e-09
FPrintScan	Short-chain dehydrogenase/reductase SDR	1.1e-09

See the detailed result >

AT2G47140.1

Model type: Protein coding
Short Description: NAD(P)-binding Rossmann-fold superfamily protein
Computational Description: NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G47130.1); Has 112960 Blast hits to 112749 proteins in 3532 species: Archae - 956; Bacteria - 74077; Metazoa - 4904; Fungi - 6164; Plants - 2566; Viruses - 5; Other Eukaryotes - 24288 (source: NCBI BLink).
Link: InterPro Scan - TAIR