K29143

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29143

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29143

Determination of introduced cDNA(s)

  • J013072M02 - Rice Full-length cDNAs - Original: J013072M02

    full reading [+] show sequence

    Nucleotide sequence: J013072M02 - full reading 
    GGCCTGCTAG TACTTCTCCC CTCCCCCTTC TCGCCGCTCT ACTCAATTCC 
    GCCGTCAAAG TCTTCGATTG ATCCGATCTC TCGTCTCGTC TCGTCATCCC 
    CATCGGAACC CTAGCCGCCT CCCGTGCCCG CGCCCGCGCC GCCACATGGA 
    GCCGAAGCCA AGCACGCCGA CGGCCGCGGC GACCCCGCGG TTTAAGCTGG 
    GGAAGCAGTC GTCGATGGCG CCCGACCGCG GCGGTGCGGG GGAGAGCTCG 
    GAGGAGGGGT CGAGCGAGGC GGTCGGGGTC ATGGGCTTCC AGCTGATGTA 
    CATGGCCCAC GAGGGCGACG TCGAGGGGAT CCAGGAGCTC CTCGACGCCG 
    GCGCCGACCC CAACTTCCGC GACTCCGACG GCCGCACGGC GATGCACATC 
    GCCGCCTGCG AGGGGCAAGC CGAGGTCGTC GAGCTGCTCC TCCAGCGTGG 
    GGCGGATGCC GTCGCCGAGG ACCAGTGGGG CAGCACGCCT TTGGCAGACG 
    CATTGCATTA CCAGAACCAT GATGTGATCA AGATCTTGGA AAAGCATGGC 
    TCCAAGCTTA AGATTGCTCC TATGCATGTT AAAAATGTCC GTGAGGTTCC 
    TGAGTACGAG ATTTCCCCGA ACGAGCTAGA TTTCACTAAT GGAAATGGTA 
    TATCAAAGGG TACATTTAGG AAAGCAACAT GGAGGGGCAT TCTGGTTGCT 
    GTTAAGAAGC TTGATGACGA TCTAATTATG GACGAGAACA AAACAAGCAT 
    TCAGAGATGA GCTTGATGTG CTACAACTAA TACGGCATCC GAATGTCGTG 
    CAATTTTTAG GTGCTGTAAC ACAAAGCAGC CCAATGATGA TTGTAATGGA 
    ATTTATGCCC AAGGGTGATT TGCGCAAGCA CTTGAGTAGG AAAGGGGCTC 
    TGGAACCGTC ATATGCAGTG AAATTAGCTC TTGATATTGC AAGAGGGATG 
    AATTATTTAC ATGAGCATAA ACCTCAAGCT ATCATCCACC GTGACCTTGA 
    GCCTTCAAAC ATATTGAGGG ATGACACTGG ACATCTGAAG GTGGCAGATT 
    TCGATCTGTG TAAGATGCTA AAATGGAGAA GAAAAGTTAG AGAAGAGAAA 
    GCTGTAACTT CTCCAGGCAA TGCATGTAGG TATGTAGCTC CAGAAGTCCT 
    GCGAAATGAA GAATATGATA CTAAAGTGGA TGTCTTCTCA TTTGCTTTGA 
    TACTTCAAGA GATGATTGAA GGATGTCTCC CTTTTTATGA CAAGAAAAAT 
    AATGAAATTG AGAAGGCACA TAATTCTAAA GAAAGGCCAC CTTTCAGAGC 
    TCCTCCAAAG CATTATGCTT ACGGATTGAG AGAGCTGATT GAACAATGCT 
    GGAGTGAAAA TCCTGCTAGC AGGCCTGACT TTAGAACGAT CATTGAACAA 
    TTGTCTTATA TCCAGAATGA AATATCTCAG AGAAACCGTT GGAAGGTGAA 
    ACCTCTCAAA TGCTTCCTGA GCTTTGAGGG CATGTGGAAG AAAGATCGAA 
    ATGAGGGCAG CACCACTCGT TCATCACGTT CATCGAGATC CTATTTTTAA 
    CAGTCAGTTG GGCCTGTTGT TGATTTCGTG TGGAGGATTG TATGCATGAT 
    TGATAGAAAA TCAACTCATT ATATACCATA GATTTGTGTT TCACTGGAAA 
    TAGTTTTGCA ACTTGTTGCT TCACTGTCGA TCACAATGCG GTTGTACATC 
    AGACAGCATT GAAAGCAATA CAAACTGGAA TATACAGACT GTTGTTTTTG 
    TT

    Gene models with high sequence identity

    1. AT3G58760.1 [+] show detail - Integrin-linked protein kinase family
      E-value: 7e-143; Score: 212.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Ankyrin repeat 14.666
    ProfileScan Ankyrin repeat-containing domain 27.425
    ProfileScan Protein kinase, catalytic domain 38.308
    HMMPanther ANKYRIN-KINASE 4e-118
    HMMPanther SERINE-THREONINE PROTEIN KINASE 4e-118
    HMMPanther L-ASPARAGINASE I 4.4e-22
    HMMPanther Asparaginase/glutaminase 4.4e-22
    HMMSmart Ankyrin repeat 560
    HMMSmart Ankyrin repeat 0.0000073
    HMMSmart Ankyrin repeat 16
    HMMSmart Serine/threonine-protein kinase domain 7.7e-31
    HMMSmart Tyrosine-protein kinase, catalytic domain 7.3e-25
    superfamily Ankyrin repeat-containing domain 3.3e-26
    superfamily Protein kinase-like domain 6.8e-61
    Gene3D Ankyrin repeat-containing domain 4.8e-22
    Gene3D no description 0.00000029
    Gene3D no description 1.8e-45
    HMMPfam Ankyrin repeat 0.0000000064
    HMMPfam Serine/threonine-protein kinase-like domain 9.5e-53
    FPrintScan TYRKINASE 0.00000001
    FPrintScan TYRKINASE 0.00000001
    FPrintScan TYRKINASE 0.00000001
    FPrintScan TYRKINASE 0.00000001

    See the detailed result >

    AT3G58760.1

    Model type
    Protein coding
    Short Description
    Integrin-linked protein kinase family
    Computational Description
    Integrin-linked protein kinase family; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: regulation of signal transduction, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Integrin-linked protein kinase (InterPro:IPR016253), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Ankyrin repeat-containing domain (InterPro:IPR020683), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Integrin-linked protein kinase family (TAIR:AT4G18950.1); Has 165609 Blast hits to 134537 proteins in 4793 species: Archae - 244; Bacteria - 16399; Metazoa - 69591; Fungi - 13531; Plants - 33415; Viruses - 845; Other Eukaryotes - 31584 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR