K29201

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29201

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29201

Determination of introduced cDNA(s)

  • J013001B03 - Rice Full-length cDNAs - Original: J013001B03

    full reading [+] show sequence

    Nucleotide sequence: J013001B03 - full reading 
    GGCACTGCGA ACTCACTGCC AATCTCTTCA TCCAGCTCAC TGCATAATCA 
    CACACTAATT AACAAGCTAA TTAGCTGCAG TAATTAGCTG CATTGAATTC 
    ATGGAGAGGG GTCAGAAGAA GAAGCTGGCG ACGTTGGTCG GGTGCAACTA 
    CGCCGGCACG CCCAACGAGC TGCAGGGCTG CATCAACGAC GTCGCCGCGA 
    TGCGCGACGC CCTCGTCGCC CGCTTCGGCT TCGCGCCGGC CGACGTCACC 
    GTGCTCACCG ACGACCGCGG CTCGCCGGTG CTCCCCACCG GCGCCAACAT 
    CAAGCGCGCG CTGGCCGACA TGGTCGCCCG CGCGGCGCCC GGCGACGTTC 
    TCTTCTTCCA CTACAGCGGC CACGGCACGC TCGTCCCGCC GGTGAAGGGG 
    CGCCGCCACG GCCACGGCGA GTGCGACGAG GCCATCGTGC CCTGCGACTT 
    CAACCTCATC ACCGACGTCG ACTTCCGCCG GCTCGTGGAC CGCGTGCCGC 
    GCGGCGCGAG CTTCACCATG GTGTCCGACT CGTGCCACAG CGGCGGGCTC 
    ATCGACCTCG AGAAGGAGCA GATCGGCCCC TCCGTCCTCG CCGCCGGCGC 
    CGCACCGGCC GCTGCTGCTG CTTCCACGAC GGCCACGCGC GCCACCGCCG 
    CGCGGTTCCT GCCGTACGCC GCCGTTGTCG AACACCTCTC CGGCGTCTCG 
    GGCGTCGACG CCGCCCACCA CGTCGCCGAC CACCTCCTCG CGCTCTTCGG 
    CGCGGACGCC AGCGCCAAGT TCCACCGCGA CGCCGAACAG CCGGTGCGCA 
    CCGACGACGA CGGCATCCTG CTGAGCGGGT GCCAGACGGA CGAGACGTCG 
    GCGGACGTGC CGGGGGACGA CGAGGTGGCG GCGGGCGGCA AGGCGTGCGG 
    CGCGTTCAGC AACGCGATAC AGACCGTGCT GGCGTCGCAC CCGGCGCCGG 
    TGAGCAACCG GCAGCTGGTG AGCATGGCCA GGGCGGTGCT GAGCGATCAG 
    GGGTTCGAGC AGCACCCGTG CCTCTACTGC AGCGACGGCA ACGCCGAGAC 
    GCCATTCCTG TGGCAAGAGG AGGACAAGAA GAAGACGGTT ACCGCGGCGG 
    CGGAGCAGGC CATGACGGCG CTCTGAATGT GTTCGACAGA GGAAGATTGA 
    TTGGTCAATA CCGATCATTG GGAAAAAAAT AAGATTATAA TTTTAATCGT 
    CTTATTCAAT GCCACAACAA GTTACCATTG CAAATTTGTA TGCCATCATG 
    CTGAAGGAAC ATGTTTATTG ATTTTTACAA TGATGAATAT ATCATCAGTT 
    CAGTATTGTT ACG

    Gene models with high sequence identity

    1. AT5G04200.1 [+] show detail - metacaspase 9
      E-value: 8e-83; Score: 304.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G04200.1

    Model type
    Protein coding
    Short Description
    metacaspase 9
    Computational Description
    metacaspase 9 (MC9); FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: apoplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 6 (TAIR:AT1G79320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR