K29236

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	present in fewer numbers in organism (PATO:0001997) (Cauline leaf::Number::few)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) present in fewer numbers in organism (PATO:0001997) (Rosette leaf::Number::few) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29236

Determination of introduced cDNA(s)

J023075I02 - Rice Full-length cDNAs - Original: J023075I02

full reading [+] show sequence

GTTAGATAAC CCTAGCCTCC CCCTTCCTCT TCCTCTCCTC CTTCTCTCGA 
TCTCTATAAA AGACCTCGGA TTTCGAATTC CTCCGCCCCG CGCGCGCGCG 
CCACCTCCCC CACGCCCGTC GCGCCCTTTT TTTTGGGGGT GGGATTCGCC 
TGGTCAAGTG CCATCGTCGG ATCATGGCGG CGGAGGCGGC AGCGGCGCTG 
GAGGGGAGCG AGCCCGTGGA CCTGGCCAAG CACCCCTCCG GCATCATCCC 
CACGCTCCAA AACATCGTAT CGACGGTCAA TTTGGATTGC AAATTAGACC 
TCAAAGCTAT AGCTTTGCAA GCTCGCAATG CAGAATATAA TCCAAAGCGT 
TTTGCTGCGG TTATCATGAG AATAAGAGAA CCAAAAACTA CAGCTCTGAT 
ATTTGCATCG GGTAAAATGG TCTGTACTGG GGCAAAGAGT GAACAACAAT 
CCAAGCTTGC AGCAAGAAAG TACGCTCGTA TTATCCAGAA GCTTGGCTTT 
CCTGCTAAAT TCAAGGATTT CAAGATTCAG AACATTGTTG GCTCTTGTGA 
TGTTAAATTT CCAATCAGGC TGGAGGGACT TGCATATTCT CATGGTGTTT 
TCTCAAGTTA TGAGCCAGAA CTCTTTCCTG GTCTGATATA TCGGATGAAG 
CAACCAAAGA TTGTTCTTCT GATTTTTGTT TCAGGCAAGA TTGTTTTGAC 
CGGAGCAAAG GTGAGGGATG AGACGTATAC CGCCTTTGAG AACATATACC 
CTGTGCTAAC GGAGTTCAGA AAAGTCCAGC AGTGAAAACT TATGGAATAC 
ACAAGTACAA GCTTCCTTGA GATTTTGCTG CCTAGTGACT GCTAATCTTA 
ACTGTACATA TGGTCTGGAG GAGCGTATAG CATCTTGTAA TTTATGTGAG 
CCCCTCGATG CACGAGTGTT GTAGACTTGT TGTAGTAGGC TTGTAGCTTG 
GGTGACTGAG AGACTTGAGT ATCGCGTTCA GTCGAACGAG GTGGAGACGT 
GGAGTTATCG TACTTTAGCC CGTGCTGATT TTTTTCCCTT CACAAATAGA 
TCTGTAGCGA AACATTTTAT TACAGAAATG GGCGGCTAAC TTTTAACAAA 
CAGAACATAT GTACTGTGGA TGCGTTGCGT TTTACAGTAG AATGTCATGG 
ACTGTTTGGA TGGTGG

Gene models with high sequence identity

AT1G55520.2 [+] show detail - TATA binding protein 2
E-value: 3e-100; Score: 362.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal	8.7e-33
superfamily	Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal	1.8e-32
PatternScan	TATA-box binding	0
PatternScan	TATA-box binding	0
FPrintScan	TATA-box binding	2.8e-68
FPrintScan	TATA-box binding	2.8e-68
FPrintScan	TATA-box binding	2.8e-68
FPrintScan	TATA-box binding	2.8e-68
FPrintScan	TATA-box binding	2.8e-68
FPrintScan	TATA-box binding	2.8e-68
HMMPanther	TATA-box binding	1.7e-136
HAMAP	TBP_MF_00408	27.9
HMMPfam	TATA-box binding	1.1e-32
HMMPfam	TATA-box binding	5.5e-35
Gene3D	Beta2-adaptin/TATA-box binding, C-terminal	5.9e-25
Gene3D	Beta2-adaptin/TATA-box binding, C-terminal	3.4e-32

See the detailed result >

AT1G55520.2

Model type: Protein coding
Short Description: TATA binding protein 2
Curator Summary: TATA-box binding protein. Required for basal transcription. Acts facilitating the recruitment of TFIID to the promoter, which together with the RNA polymerase form the preinitiation complex.
Computational Description: TATA binding protein 2 (TBP2); CONTAINS InterPro DOMAIN/s: TATA-box binding (InterPro:IPR000814), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal (InterPro:IPR012294); BEST Arabidopsis thaliana protein match is: TATA binding protein 1 (TAIR:AT3G13445.1); Has 2123 Blast hits to 1580 proteins in 405 species: Archae - 736; Bacteria - 0; Metazoa - 578; Fungi - 191; Plants - 155; Viruses - 0; Other Eukaryotes - 463 (source: NCBI BLink).
Link: InterPro Scan - TAIR