K29250

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29250

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29250

Determination of introduced cDNA(s)

  • J033076F14 - Rice Full-length cDNAs - Original: J033076F14

    full reading [+] show sequence

    Nucleotide sequence: J033076F14 - full reading 
    GAGGGAGCGG CGGCGAACCC AGCTCGGTGA GTCGTCGTCG GCGGCGGCGG 
    CGACGGCGAC GGCTAGGACC ACGTGACGCG GATCAGCTCG GAGGCAGCGA 
    CGACCCATCT CTGATCTCCC TCACGTTCAG AGGCGCGACC AAGCGTCGAG 
    GGGGAGCGCT CGACGGCGAG AGTCATGCAG GGGGCGCGTG TTAATCTGAA 
    GGGGTGGCAA CAGGCTGCTG TTGCATTCGG TTCTGCATTT GGGGCCTTGC 
    TTGACCCTAG AAGAGCTGAT CTGATAGCTG CTCTTGGGGA GACTACTGGG 
    AAGCCAGCAT TTCAGCGTGT GCTTCAGCGG ATGAGGAACA GTGCTGAAGG 
    CAGGGATGTT CTCCTGGAGC GTCCTCGAGT TATATCCACA CAAGTTTCTC 
    ATGCCTGGGA CATGCCTCAG AACACATTTG GTGCAGCATA TGCTCAGTTC 
    ATGGGATCAA GGAACTTCTC ACCGGATGAC CGCCCACCTG TCCGTTTCAT 
    GGATACAGAT GAGCTTGCGT ATGTTGCGAC CCGCGCCCGT GAAGTCCATG 
    ACTTTTGGCA TGTGCTGTTC GGCCTTCCTA CGAACCTGAT TGGAGAGACT 
    GCCCTTAAGG TCATTGAGTT TGAACAGATG TTCCTTCCAA TGTGCATGCT 
    TTCAGTCGTT GGGGGCTCTG CGAGGTTCAA TGAGAAACAA AGGACACTGT 
    TTTTTCAGCA TTATTTCCCA TGGGCTTCAA AAGCAGGTCT TAAGTGCACA 
    GATCTTATGT CTGTGTACTA TGAGAAGCAT TTTCATGAAG ATTTGGATGA 
    AGTGAGGAGG AACTGGGGAA TTATACCATG CCCTGATCCC AAAAGGAGCA 
    GTGTTTAGAC TTTTAGATCG GTACATTTTG CATGAAAGAT GTCTGAACTT 
    GGTTTTCACT TTGTCTACGT TAGTATTAGC TCTTCCCTTT CAAGAATAAT 
    AGCAAGAGTT ATGCTATTGA TACCTAAAAA AACTAGTAAT TCTCTTTAAC 
    TTAGCATAGC AACTAAGCTT GCAATGTTGA TGTTCCCTTT AACAATAGTG 
    TAGATGAGTT AATTACATTT TTATGTGTAA TACTAGCTGA ATGCCGGTAC 
    TTCGCTATGG ACAGAAGAAA ACATATCATA ATATTGTCTG AAATAAATAA 
    AATTATATTT TC

    Gene models with high sequence identity

    1. AT2G03690.1 [+] show detail - coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein
      E-value: 2e-103; Score: 372.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther UBIQUINONE BIOSYNTHESIS PROTEIN 1.1e-53
    HMMPfam Coenzyme Q biosynthesis Coq4 5.9e-89

    See the detailed result >

    AT2G03690.1

    Model type
    Protein coding
    Short Description
    coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein
    Curator Summary
    Ubiquinone biosynthesis protein COQ4 homolog.
    Computational Description
    coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquinone biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Coenzyme Q biosynthesis Coq4 (InterPro:IPR007715); Has 675 Blast hits to 675 proteins in 251 species: Archae - 0; Bacteria - 141; Metazoa - 162; Fungi - 176; Plants - 60; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR