K29250

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29250

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29250

Determination of introduced cDNA(s)

  • J033076F14 - Rice Full-length cDNAs - Original: J033076F14

    full reading [+] show sequence

    Nucleotide sequence: J033076F14 - full reading
    GAGGGAGCGG CGGCGAACCC AGCTCGGTGA GTCGTCGTCG GCGGCGGCGG 
    CGACGGCGAC GGCTAGGACC ACGTGACGCG GATCAGCTCG GAGGCAGCGA
    CGACCCATCT CTGATCTCCC TCACGTTCAG AGGCGCGACC AAGCGTCGAG
    GGGGAGCGCT CGACGGCGAG AGTCATGCAG GGGGCGCGTG TTAATCTGAA
    GGGGTGGCAA CAGGCTGCTG TTGCATTCGG TTCTGCATTT GGGGCCTTGC
    TTGACCCTAG AAGAGCTGAT CTGATAGCTG CTCTTGGGGA GACTACTGGG
    AAGCCAGCAT TTCAGCGTGT GCTTCAGCGG ATGAGGAACA GTGCTGAAGG
    CAGGGATGTT CTCCTGGAGC GTCCTCGAGT TATATCCACA CAAGTTTCTC
    ATGCCTGGGA CATGCCTCAG AACACATTTG GTGCAGCATA TGCTCAGTTC
    ATGGGATCAA GGAACTTCTC ACCGGATGAC CGCCCACCTG TCCGTTTCAT
    GGATACAGAT GAGCTTGCGT ATGTTGCGAC CCGCGCCCGT GAAGTCCATG
    ACTTTTGGCA TGTGCTGTTC GGCCTTCCTA CGAACCTGAT TGGAGAGACT
    GCCCTTAAGG TCATTGAGTT TGAACAGATG TTCCTTCCAA TGTGCATGCT
    TTCAGTCGTT GGGGGCTCTG CGAGGTTCAA TGAGAAACAA AGGACACTGT
    TTTTTCAGCA TTATTTCCCA TGGGCTTCAA AAGCAGGTCT TAAGTGCACA
    GATCTTATGT CTGTGTACTA TGAGAAGCAT TTTCATGAAG ATTTGGATGA
    AGTGAGGAGG AACTGGGGAA TTATACCATG CCCTGATCCC AAAAGGAGCA
    GTGTTTAGAC TTTTAGATCG GTACATTTTG CATGAAAGAT GTCTGAACTT
    GGTTTTCACT TTGTCTACGT TAGTATTAGC TCTTCCCTTT CAAGAATAAT
    AGCAAGAGTT ATGCTATTGA TACCTAAAAA AACTAGTAAT TCTCTTTAAC
    TTAGCATAGC AACTAAGCTT GCAATGTTGA TGTTCCCTTT AACAATAGTG
    TAGATGAGTT AATTACATTT TTATGTGTAA TACTAGCTGA ATGCCGGTAC
    TTCGCTATGG ACAGAAGAAA ACATATCATA ATATTGTCTG AAATAAATAA
    AATTATATTT TC

    Gene models with high sequence identity

    1. AT2G03690.1 [+] show detail - coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein
      E-value: 2e-103; Score: 372.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther UBIQUINONE BIOSYNTHESIS PROTEIN 1.1e-53
    HMMPfam Coenzyme Q biosynthesis Coq4 5.9e-89

    See the detailed result >

    AT2G03690.1

    Model type
    Protein coding
    Short Description
    coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein
    Curator Summary
    Ubiquinone biosynthesis protein COQ4 homolog.
    Computational Description
    coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquinone biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Coenzyme Q biosynthesis Coq4 (InterPro:IPR007715); Has 675 Blast hits to 675 proteins in 251 species: Archae - 0; Bacteria - 141; Metazoa - 162; Fungi - 176; Plants - 60; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR