K29310

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29310

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29310

Determination of introduced cDNA(s)

  • J013111D24 - Rice Full-length cDNAs - Original: J013111D24

    full reading [+] show sequence

    Nucleotide sequence: J013111D24 - full reading
    GACCTGACAC GCCTGCCATG CCTCCCGCCC TCACCTCCAA CCCCCCCTCC 
    TTCCGCCCCC TCTCCACCCC TCTAACCCGC CGCCGTGCCG CCACAACCTT
    CCTCTGCCGT GTCGGCCCTG GCAAGCCTTC CAAGGACACC GGCGCGGATG
    ACGAGCCGAA GAAGAGGTCG TTCTTCGCCG ATTTCGGTAA GCTCTCGGAT
    GGAAGGTCGC TGATACCGGC CTTCCCGCCG GCCGCGGCTG GGTCTCTGTT
    CGCCGGCGGG AGGGGGAGGA AGGACCCGCA GACAGTGTTC GTCGCGGGCG
    CCACGGGGCA GGCGGGAGTT CGCATCGCGC AGACGCTGCT GCGGCAGGGG
    TTCGCCGTGC GCGCCGGGGT GCCGGACCTC GCGTCCGCCC AGGAGCTGGC
    GCGGCTCGCC TCCGCGTACC GGCTCATTTC CCCCACCGAG GCGCGCCGAC
    TCAACGCGGT GGAGTCCGAT TTCGAGGACC CCGAGGCGAT CGCCAAGTCC
    ATCGGCCCTG CAACTAAGGT GGTGGTTACA GTCGGCGCAG CTGAGAAGGG
    GCCCGACGGC GGTGTGGTCA CCACCGACGA GGCGCTCCGA GTTGTGCAGG
    CTGCTGACCT TGCCGGCGTG ACACACGTTG TGGTGGTGTA CGACCTGGGG
    GCCGGTGACC CCAGTGGTGA GTCGACGTAC AATGTGCTCG ACGGGTTCAC
    GTCCTTCTTC TCGAACCTCT TCTCCCGTGT GCAGTCCTTG CCACTAAACG
    AGTTCTTGGC TAAGGTGGTG GAGACCGACG TCAGGTACAC TCTCATCAAG
    ACGTCACTCA CAGATGACTA CAGCCCTGAG AGCACCTATG GCTTGGTCCT
    GGCCAAAGAG GGCGCGTCCA GCACTACTTC CTCAACAGAA ACCGGCAAGG
    TGTCCAAGTT GCAGATTGCT GGTCTTGTGG CAGATGTCTT CTCCAACGTG
    GCAGTCGCGG AGAACAAGGT TGTCCAAGTT TCCACTAGCT CATCAGTAAC
    ATCCAAGACC ATAGAGGAGG CTTTCTCAGC TATCCCTGAG GACAGTAGAA
    GGAAGGAGTA CCAAGATGCT GTTGCAAAAG CACAGGCAGA AGAGGAGACT
    CGGGCTTCGC AGCGAACTCG TCAGGCAGAA GAGGACACTA CTACGGTCAA
    AGCCGGGGGG AAGAAGACGC CCTCTGATGA GGCAGCTGCA AGTGAGGCGC
    AAGCTTCTCT GGAGAACCTT CTGAGCAGAG CCAAAGGGTT CGGCACGGAC
    TTCTCATGGG AGAAGCTCAG CACACAACTT GCAGGAGTGG CCACTCAGGA
    CTCAGACGAG GTGGAACCAA AAGCAAAGAA GCTGGCACCA CAGAGAGCTG
    TTGTGAAGCC CGCGGCGCAG AAGACAAGAC CAACACCAAA GCAGCCGGAA
    TCCAAGCCGG ATGTGAGGCC CGTGTTTGGG GGACTCTTCA AGCAAGAAAC
    AATCTTTGTG GATGAGGACT GAGCTAATGC AGACTCTGCC ATTTTTCTTA
    ATCTTTTGTA TGCTATATCT ATGAAGCTCT TGGTGTATTC TTGGAAAGTG
    AATGAGTGAC AGTTGTATAA AATTGGCTGC AAAACCGTAT AACATTCTCT
    GCAGGTGAGA ATTGTTCGC

    Gene models with high sequence identity

    1. AT3G46780.1 [+] show detail - plastid transcriptionally active 16
      E-value: 4e-101; Score: 365.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily NAD(P)-binding domain 1.2e-12
    Gene3D NAD(P)-binding domain 5.5e-15
    HMMPfam NmrA 8.4e-06
    Coil coiled-coil 0

    See the detailed result >

    AT3G46780.1

    Model type
    Protein coding
    Short Description
    plastid transcriptionally active 16
    Computational Description
    plastid transcriptionally active 16 (PTAC16); FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G18890.1); Has 1243 Blast hits to 1093 proteins in 359 species: Archae - 5; Bacteria - 555; Metazoa - 73; Fungi - 75; Plants - 168; Viruses - 22; Other Eukaryotes - 345 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J033115O22 - Rice Full-length cDNAs - Original: J033115O22

    full reading [+] show sequence

    Nucleotide sequence: J033115O22 - full reading
    GAAGGCCTTC GTCTCGACAC GTTTGCATTG CAGCAGCTCA TAAGTTTCTT 
    CTTCGTTTCT GCTCCCAGTG CTAAGGCAGC ACAGTCGTTC GTCGCCATGC
    CAGGGCTCAC CATCGGCGAC ACCGTCCCCA ACCTGGAGCT GGACTCCACC
    CACGGCAAGA TCCGCATCCA CGACTTCGTC GGCGACACCT ATGTCATCCT
    CTTCTCCCAC CCCGGCGACT TCACCCCGGT CTGCACCACG GAGCTGGCAG
    CCATGGCCGG CTACGCCAAG GAGTTCGACA AGAGGGGCGT CAAGCTGCTC
    GGCATCTCCT GCGACGACGT GCAGTCTCAC AAGGACTGGA TCAAGGACAT
    CGAGGCCTAC AAGCCTGGGA ACCGCGTGAC GTACCCGATC ATGGCCGATC
    CGAGCCGCGA GGCCATCAAG CAGCTGAACA TGGTCGACCC GAACGAGAAG
    GATTCCAACG GCGGCCACCT CCCGTCCCGC GCGCTGCACA TCGTCGGCCC
    CGACAAGAAG GTGAAGCTGA GCTTCCTGTA CCCGGCGTGC GTGGGGCGGA
    ACATGGATGA GGTGGTGCGT GCGGTCGACG CGCTGCAGAC GGCGGCGAAG
    CACGCGGTGG CGACGCCGGT GAACTGGAAG CCCGGCGAGC GCGTCGTCAT
    CCCTCCCGGC GTCTCCGACG ACGAGGCGAA GGAGAAGTTC CCCCAGGGGT
    TCGACACCGC CGACCTGCCG TCCGGCAAGG GCTACCTCCG CTTCACCAAG
    GTCGGCTAGA TCATATCGAT ATCGACCTCG CTCTTCGTAC ATCATGTGCG
    CCACGCGTGC GTGATAGCGT GTGCTGGCGT GATGACTATG CGAGATGCAT
    CCCTGTGTGT GTTGGTGTGG ATAATGCCGC TACGTTTGGA ACAGTAGTGC
    ATTTACTCTG TGCTACTGTC TGAACTTTGG CTGTTTGGCA GACTGTTTAT
    GTACCCGTAT GTTCGCCCCT GTACTAATAG AGTGGGTGTT GTGGTTGGCA
    AGTACTCTCC TCGGACAACA TTTAACTTTG ACTACTAATA ACAAACAAAT
    TAAAAAGATC AATCAGATGT TACTAGACAT CTTAATTTTA TT

    Gene models with high sequence identity

    1. AT1G48130.1 [+] show detail - 1-cysteine peroxiredoxin 1
      E-value: 6e-88; Score: 321.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Thioredoxin-like 17.208
    Gene3D Thioredoxin fold 1.3e-54
    HMMPfam Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 7e-32
    HMMPfam Peroxiredoxin, C-terminal 1.1e-14
    superfamily Thioredoxin-like fold 2.5e-63
    HMMPanther PEROXIREDOXIN 6 RELATED 1.9e-127
    HMMPanther PEROXIREDOXIN 1.9e-127

    See the detailed result >

    AT1G48130.1

    Model type
    Protein coding
    Short Description
    1-cysteine peroxiredoxin 1
    Curator Summary
    encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought.
    Computational Description
    1-cysteine peroxiredoxin 1 (PER1); FUNCTIONS IN: thioredoxin peroxidase activity, antioxidant activity; INVOLVED IN: maintenance of seed dormancy, response to desiccation; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, aleurone layer, seed; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Peroxiredoxin, C-terminal (InterPro:IPR019479), Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: 2-cysteine peroxiredoxin B (TAIR:AT5G06290.1); Has 11559 Blast hits to 11559 proteins in 2567 species: Archae - 531; Bacteria - 7064; Metazoa - 1157; Fungi - 321; Plants - 349; Viruses - 0; Other Eukaryotes - 2137 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR