K29310

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	increased size (PATO:0000586) (Cauline leaf::Shape::large)
	rosette leaf (PO:0000014)	increased size (PATO:0000586) (Rosette leaf::Shape::large) decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide) present in fewer numbers in organism (PATO:0001997) (Rosette leaf::Number::few) abnormal (PATO:0000460) (Rosette leaf::Others)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	stem (PO:0009047)	increased thickness (PATO:0000591) (Stem::Shape::thick)
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29310

Determination of introduced cDNA(s)

J013111D24 - Rice Full-length cDNAs - Original: J013111D24

full reading [+] show sequence

GACCTGACAC GCCTGCCATG CCTCCCGCCC TCACCTCCAA CCCCCCCTCC 
TTCCGCCCCC TCTCCACCCC TCTAACCCGC CGCCGTGCCG CCACAACCTT 
CCTCTGCCGT GTCGGCCCTG GCAAGCCTTC CAAGGACACC GGCGCGGATG 
ACGAGCCGAA GAAGAGGTCG TTCTTCGCCG ATTTCGGTAA GCTCTCGGAT 
GGAAGGTCGC TGATACCGGC CTTCCCGCCG GCCGCGGCTG GGTCTCTGTT 
CGCCGGCGGG AGGGGGAGGA AGGACCCGCA GACAGTGTTC GTCGCGGGCG 
CCACGGGGCA GGCGGGAGTT CGCATCGCGC AGACGCTGCT GCGGCAGGGG 
TTCGCCGTGC GCGCCGGGGT GCCGGACCTC GCGTCCGCCC AGGAGCTGGC 
GCGGCTCGCC TCCGCGTACC GGCTCATTTC CCCCACCGAG GCGCGCCGAC 
TCAACGCGGT GGAGTCCGAT TTCGAGGACC CCGAGGCGAT CGCCAAGTCC 
ATCGGCCCTG CAACTAAGGT GGTGGTTACA GTCGGCGCAG CTGAGAAGGG 
GCCCGACGGC GGTGTGGTCA CCACCGACGA GGCGCTCCGA GTTGTGCAGG 
CTGCTGACCT TGCCGGCGTG ACACACGTTG TGGTGGTGTA CGACCTGGGG 
GCCGGTGACC CCAGTGGTGA GTCGACGTAC AATGTGCTCG ACGGGTTCAC 
GTCCTTCTTC TCGAACCTCT TCTCCCGTGT GCAGTCCTTG CCACTAAACG 
AGTTCTTGGC TAAGGTGGTG GAGACCGACG TCAGGTACAC TCTCATCAAG 
ACGTCACTCA CAGATGACTA CAGCCCTGAG AGCACCTATG GCTTGGTCCT 
GGCCAAAGAG GGCGCGTCCA GCACTACTTC CTCAACAGAA ACCGGCAAGG 
TGTCCAAGTT GCAGATTGCT GGTCTTGTGG CAGATGTCTT CTCCAACGTG 
GCAGTCGCGG AGAACAAGGT TGTCCAAGTT TCCACTAGCT CATCAGTAAC 
ATCCAAGACC ATAGAGGAGG CTTTCTCAGC TATCCCTGAG GACAGTAGAA 
GGAAGGAGTA CCAAGATGCT GTTGCAAAAG CACAGGCAGA AGAGGAGACT 
CGGGCTTCGC AGCGAACTCG TCAGGCAGAA GAGGACACTA CTACGGTCAA 
AGCCGGGGGG AAGAAGACGC CCTCTGATGA GGCAGCTGCA AGTGAGGCGC 
AAGCTTCTCT GGAGAACCTT CTGAGCAGAG CCAAAGGGTT CGGCACGGAC 
TTCTCATGGG AGAAGCTCAG CACACAACTT GCAGGAGTGG CCACTCAGGA 
CTCAGACGAG GTGGAACCAA AAGCAAAGAA GCTGGCACCA CAGAGAGCTG 
TTGTGAAGCC CGCGGCGCAG AAGACAAGAC CAACACCAAA GCAGCCGGAA 
TCCAAGCCGG ATGTGAGGCC CGTGTTTGGG GGACTCTTCA AGCAAGAAAC 
AATCTTTGTG GATGAGGACT GAGCTAATGC AGACTCTGCC ATTTTTCTTA 
ATCTTTTGTA TGCTATATCT ATGAAGCTCT TGGTGTATTC TTGGAAAGTG 
AATGAGTGAC AGTTGTATAA AATTGGCTGC AAAACCGTAT AACATTCTCT 
GCAGGTGAGA ATTGTTCGC

Gene models with high sequence identity

AT3G46780.1 [+] show detail - plastid transcriptionally active 16
E-value: 4e-101; Score: 365.00

InterPro Scan Digest

Program	Description	E-value
superfamily	NAD(P)-binding domain	0.0000000000012
Gene3D	NAD(P)-binding domain	0.0000000000000055
HMMPfam	NmrA	0.0000084
Coil	coiled-coil	0

See the detailed result >

AT3G46780.1

Model type: Protein coding
Short Description: plastid transcriptionally active 16
Computational Description: plastid transcriptionally active 16 (PTAC16); FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G18890.1); Has 1243 Blast hits to 1093 proteins in 359 species: Archae - 5; Bacteria - 555; Metazoa - 73; Fungi - 75; Plants - 168; Viruses - 22; Other Eukaryotes - 345 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J033115O22 - Rice Full-length cDNAs - Original: J033115O22

full reading [+] show sequence

GAAGGCCTTC GTCTCGACAC GTTTGCATTG CAGCAGCTCA TAAGTTTCTT 
CTTCGTTTCT GCTCCCAGTG CTAAGGCAGC ACAGTCGTTC GTCGCCATGC 
CAGGGCTCAC CATCGGCGAC ACCGTCCCCA ACCTGGAGCT GGACTCCACC 
CACGGCAAGA TCCGCATCCA CGACTTCGTC GGCGACACCT ATGTCATCCT 
CTTCTCCCAC CCCGGCGACT TCACCCCGGT CTGCACCACG GAGCTGGCAG 
CCATGGCCGG CTACGCCAAG GAGTTCGACA AGAGGGGCGT CAAGCTGCTC 
GGCATCTCCT GCGACGACGT GCAGTCTCAC AAGGACTGGA TCAAGGACAT 
CGAGGCCTAC AAGCCTGGGA ACCGCGTGAC GTACCCGATC ATGGCCGATC 
CGAGCCGCGA GGCCATCAAG CAGCTGAACA TGGTCGACCC GAACGAGAAG 
GATTCCAACG GCGGCCACCT CCCGTCCCGC GCGCTGCACA TCGTCGGCCC 
CGACAAGAAG GTGAAGCTGA GCTTCCTGTA CCCGGCGTGC GTGGGGCGGA 
ACATGGATGA GGTGGTGCGT GCGGTCGACG CGCTGCAGAC GGCGGCGAAG 
CACGCGGTGG CGACGCCGGT GAACTGGAAG CCCGGCGAGC GCGTCGTCAT 
CCCTCCCGGC GTCTCCGACG ACGAGGCGAA GGAGAAGTTC CCCCAGGGGT 
TCGACACCGC CGACCTGCCG TCCGGCAAGG GCTACCTCCG CTTCACCAAG 
GTCGGCTAGA TCATATCGAT ATCGACCTCG CTCTTCGTAC ATCATGTGCG 
CCACGCGTGC GTGATAGCGT GTGCTGGCGT GATGACTATG CGAGATGCAT 
CCCTGTGTGT GTTGGTGTGG ATAATGCCGC TACGTTTGGA ACAGTAGTGC 
ATTTACTCTG TGCTACTGTC TGAACTTTGG CTGTTTGGCA GACTGTTTAT 
GTACCCGTAT GTTCGCCCCT GTACTAATAG AGTGGGTGTT GTGGTTGGCA 
AGTACTCTCC TCGGACAACA TTTAACTTTG ACTACTAATA ACAAACAAAT 
TAAAAAGATC AATCAGATGT TACTAGACAT CTTAATTTTA TT

Gene models with high sequence identity

AT1G48130.1 [+] show detail - 1-cysteine peroxiredoxin 1
E-value: 6e-88; Score: 321.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	Thioredoxin-like	17.208
Gene3D	Thioredoxin fold	1.3e-54
HMMPfam	Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen	7e-32
HMMPfam	Peroxiredoxin, C-terminal	0.000000000000011
superfamily	Thioredoxin-like fold	2.5e-63
HMMPanther	PEROXIREDOXIN 6 RELATED	1.9e-127
HMMPanther	PEROXIREDOXIN	1.9e-127

See the detailed result >

AT1G48130.1

Model type: Protein coding
Short Description: 1-cysteine peroxiredoxin 1
Curator Summary: encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought.
Computational Description: 1-cysteine peroxiredoxin 1 (PER1); FUNCTIONS IN: thioredoxin peroxidase activity, antioxidant activity; INVOLVED IN: maintenance of seed dormancy, response to desiccation; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, aleurone layer, seed; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Peroxiredoxin, C-terminal (InterPro:IPR019479), Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: 2-cysteine peroxiredoxin B (TAIR:AT5G06290.1); Has 11559 Blast hits to 11559 proteins in 2567 species: Archae - 531; Bacteria - 7064; Metazoa - 1157; Fungi - 321; Plants - 349; Viruses - 0; Other Eukaryotes - 2137 (source: NCBI BLink).
Link: InterPro Scan - TAIR